DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir7g

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster


Alignment Length:455 Identity:81/455 - (17%)
Similarity:158/455 - (34%) Gaps:117/455 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse   418 PYVMLKKNANQF----EGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMV 478
            |.::|.:..:.|    ||.....|....|..|:::.:.:|.:...:.|   ..::..|.....::
  Fly   213 PLIVLARKVSPFLDLDEGQRELRGLEGRLLQELSRRMNFSIQFSGLQD---QLKNRTTWTEKQLL 274

Mouse   479 GELVYGRADVAVAPLTITLVREEVIDFSK------PFMSLGI--SIMIKKPQKSKPGVFSFLDPL 535
            .:||..|    :|.|.|..||:. |.::.      |..|..:  .:::.....:...::||  |.
  Fly   275 QKLVQER----IAHLAIGYVRKR-IQYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSF--PF 332

Mouse   536 AYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQ 600
            ....|:|:||:::.:|.:..|. |                          |..:.|...|..:..
  Fly   333 QALTWICLVFSFLSISCLALLHXR--------------------------GAGDRLALVLAVYAA 371

Mouse   601 Q-GCDIS-PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGT 663
            . |..|. |...|.:::...|..|.||:.|.|:|.|...|..........:.:||   |...|..
  Fly   372 SLGLPIDPPERPSLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLPGNLQDL---THGDYAA 433

Mouse   664 LEAGSTKEFFR-----------RSKIAVFEKMWTYMKS-----------AEPSVFVRTTEEGMIR 706
            :...:|.:..|           :|.|...|:....:::           :.|..|...:::.::.
  Fly   434 VMGRTTLQDLREVPSLQDLLGLKSVIVTSEREEEVLRTLDRCTLREGAGSHPLFFGLISQDALLH 498

Mouse   707 VRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQG 771
            :.: :|..|........:.:||:                ..|...|.|.|.:.::..|:.:...|
  Fly   499 LTQ-RGHRAGAYHIIPQDVLEQQ----------------LAIYLQKHSHLASHLDHLVMSIRSVG 546

Mouse   772 LLDK----------LKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALI 826
            |:..          .::::.|              :...:...::..| |||..||.|..||..|
  Fly   547 LVHHWAGQMASERYFRSRFLY--------------REKRIRQPDLWAV-YILTAGLYLLSLVVFI 596

Mouse   827  826
              Fly   597  596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 71/414 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir7gNP_001368933.1 None
Blue background indicates that the domain is not in the aligned region.

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