DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Gria1 and Ir7g

Sequence 1:NP_001106796.1 Gene:Gria1 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_572413.2 Gene:Ir7g FlyBaseID:FBgn0029968 Length:561 Species:Drosophila melanogaster

Alignment Length:191 Identity:39/192 (20%)
Similarity:73/192 (38%) Gaps:35/192 (18%)


Mouse   418 PYVMLKKNANQF----EGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMV 478
            |.::|.:..:.|    ||.....|....|..|:::.:.:|.:...:.|   ..::..|.....::
  Fly   213 PLIVLARKVSPFLDLDEGQRELRGLEGRLLQELSRRMNFSIQFSGLQD---QLKNRTTWTEKQLL 274

Mouse   479 GELVYGRADVAVAPLTITLVREEVIDFSK------PFMSLGI--SIMIKKPQKSKPGVFSFLDPL 535
            .:||..|    :|.|.|..||:. |.::.      |..|..:  .:::.....:...::||  |.
  Fly   275 QKLVQER----IAHLAIGYVRKR-IQYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSF--PF 332

Mouse   536 AYEIWMC-------IVFAYI---GVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFG 586
            ....|:|       ::|..|   ..|.:||.:.|   |..|.......:|.|..|.:...|
  Fly   333 QALTWICLLLFASWLIFGLIVRSMYSALLFFILR---YHLHQRLPGNLQDLTHGDYAAVMG 390

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385
ANF_receptor 37..372 CDD:279440
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 39/192 (20%)
Glutamate binding. {ECO:0000250} 492..494 1/2 (50%)
Lig_chan 538..817 CDD:278489 14/60 (23%)
Glutamate binding. {ECO:0000250} 668..669
PDZ-binding 904..907
Ir7gNP_572413.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C111187928
eggNOG 1 0.900 E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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