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Protein Alignment Gria1 and Ir7c

DIOPT Version :9

Sequence 1:	NP_001106796.1	Gene:	Gria1 / 14799	MGIID:	95808	Length:	907	Species:	Mus musculus
Sequence 2:	NP_001245572.1	Gene:	Ir7c / 31692	FlyBaseID:	FBgn0029966	Length:	625	Species:	Drosophila melanogaster

Alignment Length:	462	Identity:	93/462 - (20%)
Similarity:	177/462 - (38%)	Gaps:	96/462 - (20%)

- Green bases have known domain annotations that are detailed below.

Mouse   410 IVTTILEDPYVMLKKNANQFEGNDRY--EGYCVELAAEIAKHVGYSYRL---------EIVSDGK 463
            :|.|....|||:::.:.....|...:  ||.   :...:|:.:.::.:|         ||:.||.
  Fly   217 VVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKLVEQKDKNRGEILPDGN 278

Mouse   464 YGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGV 528
            :          .|::..:|.|..::.......:..|.:::..|..:.|..|.:::.......| :
  Fly   279 F----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-M 332

Mouse   529 FSFLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLW 592
            .....|..|.||.||:.:.| |..::..|.....|          |.......:.|... |..:|
  Fly   333 GRLTRPFRYIIWSCILVSLIFGFVLICLLKITALP----------GLRNLVLGRRNRLP-FMGMW 386

Mouse   593 FSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES-AEDLA 654
            .||  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:| :|.||
  Fly   387 ASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLA 446

Mouse   655 KQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSV---FVRTTEEGMIRVR--KSKGKY 714
            |..|              ||     :...:.|..|.:.|:.   .|.:.||.:.|:|  ...|..
  Fly   447 KDYE--------------FR-----ILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGIT 492

Mouse   715 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP-------------KGSALRGPVNLAVLK 766
            ..||:.|:|::..:..|           :|.:....|             ..|..:..::..::.
  Fly   493 VALLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMA 546

Mouse   767 LSEQGVLDKLKSKWWYDKGECGSKDSGSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYK 831
            :...|::.:.: |.:.|:.:..||....:.|  .||:..::|:|....|...:|::|.::|....
  Fly   547 MMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIFVCCAGLYLVALIVFILEILTT 608

Mouse   832 SRSESKR 838
            :....:|
  Fly   609 NHRRLRR 615

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.