DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gria1 and Ir7b

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster


Alignment Length:482 Identity:85/482 - (17%)
Similarity:170/482 - (35%) Gaps:114/482 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   416 ED-PYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAW---NG 476
            || ||::.:.     :|:..:.|....|...:|:::.::.       |.|.....:..|.   :|
  Fly   218 EDMPYLVWRP-----DGSGSFVGIEGALLQFMAENLNFTV-------GLYWMNKEEVLATFDESG 270

Mouse   477 MVGELVYG-RADVAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSFLD-PLA 536
            .:.:.::| .||.::............|.:|:.   |||   .||:....:|....:..|. |..
  Fly   271 RIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEKLSFPFT 332

Mouse   537 YEIWMCIVFAYIGVSVVLFLVSRFSPYEW-HSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQ 600
            ..:|..|....|...::|.|:.|     | |..|...          |.:  :..|..::|..::
  Fly   333 PLLWRAIGLVLILACLLLMLLVR-----WRHHHELPR----------NPY--YELLVLTMGGNLE 380

Mouse   601 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLE 665
            ...  .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.::..::..|    :.|::
  Fly   381 DRW--VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ----HFTIQ 439

Mouse   666 AGSTKEFFRRSKIAVFE---KMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIE 727
            .....|  .|...::.|   :...|::.:|...|....::        .|..|.:...|..||..
  Fly   440 LAEVNE--ARILASLPELRPEQLVYLEGSELQSFPALAQQ--------SGSSARVAILTPYEYFG 494

Mouse   728 QRKPCDTMK-----VGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC 787
            ..:....|.     |...:.::.......:.|.|...:|..:...:..|.|:....::       
  Fly   495 YFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQY------- 552

Mouse   788 GSGGGDSKDKTSA-----------------------------------LSLSNVAGVFYILI-GG 816
             ....|.||::.|                                   ||:..:|.:|:::: ..
  Fly   553 -VSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLILWAN 616

Mouse   817 LGLAMLVALIEFC---YKSRSESKRMK 840
            || |::|.::|..   .|.|...::||
  Fly   617 LG-AVVVFVLELLLPRIKLRKILRKMK 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 68/388 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir7bNP_572410.2 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.