DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir41a

DIOPT Version :10

Sequence 1:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster


Alignment Length:147 Identity:46/147 - (31%)
Similarity:62/147 - (42%) Gaps:27/147 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 TTAPPLNATGNHTANNASNASSNSVYSNNTTTQSSSTTQMTPTVSTNNTSGTTLSNLT----VTA 98
            ||..|...|...|....        |...|||:.::||....|.:|..|:.||....|    .|.
  Fly     3 TTRRPTTTTRRTTPAQE--------YLPPTTTRPTTTTTRRTTTTTRRTTTTTRPTTTTTRRTTP 59

Mouse    99 SAEH--PTTTENDKVTSSTTTTTNLTAVAFTNSTEKATLLSTKPVTETT--AITYTVPNSTHSVI 159
            :.|:  ||||     |..|||||..|    |.:|.:.|..:|:|.|.||  .:|.|....:....
  Fly    60 AIEYLPPTTT-----TRRTTTTTRPT----TTTTRRTTTTTTRPTTRTTPRVVTTTKCPLSEQNP 115

Mouse   160 DSQAGLN--RSEQSLTI 174
            |...|.:  :.:||.||
  Fly   116 DGSCGYDYPKPDQSFTI 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613 46/147 (31%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Ir41aNP_995744.4 None
Blue background indicates that the domain is not in the aligned region.

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