DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Rgk1 and rem1

Sequence 1:NP_725875.3 Gene:Rgk1 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster
Sequence 2:NP_957468.1 Gene:rem1 ZFINID:ZDB-GENE-040317-1 Length:298 Species:Danio rerio

Alignment Length:335 Identity:105/336 (31%)
Similarity:160/336 (48%) Gaps:75/336 (22%)


  Fly  1070 RSRSNNSVASS--------NSSTE--HLTTQQQLS---APASVSARTSLASSRESSTSNPGNGPY 1121
            |.|::..:.||        :.||:  |....|..|   ...|:.:|.:.:|..||.:|. ....|
Zfish    14 RRRASTPIPSSRQAGRGDRDPSTDPYHPPLAQSASYHPGDKSIHSRANWSSDSESDSSG-SECLY 77

  Fly  1122 RVLMLGGPAVGKSSLVSQFMTSEYLHAYDTSIDDESGEKAVSVLLSGEESELIFIDHGYTEMTPD 1186
            ||::||...||||||.:.|...:...|: ..|.:::.|:  ::::.||::.|:.:|...|:...|
Zfish    78 RVVLLGDHGVGKSSLANIFAGIQEKDAH-KHIGEDAYER--TLMVDGEDTTLVVMDPWETDKQED 139

  Fly  1187 E--CLTNY---DPHGYCVIYSAADRSSFSVAEQV---LQVLWTNQNIAQKAVILVSNKADLARSR 1243
            :  .|.:|   ..:.|.::||..|||||..|.::   |:.:...:||   .:|||.||:||.|||
Zfish   140 DEKFLQDYCMQVGNAYIIVYSITDRSSFESASELRIQLRRIRQAENI---PIILVGNKSDLVRSR 201

  Fly  1244 LVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKLENP---EKSRDLF-RKRSIRK 1304
            .|..|||:|.|..:||||||||..::|||.||..|.:.||||:.::.   |:.|.:: ||.||.|
Zfish   202 EVAVEEGRACAVMFDCKFIETSASLHHNVHELFEGTVRQIRLRRDSKEINERRRSVYKRKESITK 266

  Fly  1305 SKRRACSPLNAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLKVKGLLGRVWTRDSK 1369
            ..||....|.|                               .:....:|||            :
Zfish   267 KARRFLDRLVA-------------------------------KNNKKMALKV------------R 288

  Fly  1370 SKSCENLHVL 1379
            ||||.:|.||
Zfish   289 SKSCHDLAVL 298

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Rgk1NP_725875.3 DUF2967 459..715 CDD:288079
P-loop_NTPase 1121..1379 CDD:304359 89/270 (33%)
small_GTPase 1121..1286 CDD:197466 69/173 (40%)
rem1NP_957468.1 RGK 77..298 CDD:206715 89/270 (33%)
small_GTPase 77..244 CDD:197466 69/173 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR45775
Phylome 1 0.910 0.857 Consistency score
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R5084
TreeFam 1 0.960
ZFIN 00.000 Not matched by this tool.
55.010

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