DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Rgk1 and Y52B11A.4

Sequence 1:NP_725875.3 Gene:Rgk1 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster
Sequence 2:NP_492856.1 Gene:Y52B11A.4 WormBaseID:WBGene00013124 Length:467 Species:Caenorhabditis elegans

Alignment Length:431 Identity:124/432 (29%)
Similarity:193/432 (45%) Gaps:76/432 (18%)


  Fly   971 QHKRDENMRQLLDVTNTLTIEELRDFQMRYGSPHHSRSQSVKM-----------------PGSRA 1018
            |.:.|...|:||...|.|.:.::|:      |...:||||.|.                 |..|.
 Worm    51 QLRTDSANRELLTGDNYLGVTDMRN------STTVARSQSFKHRPKPMVEVRRMAIDDVGPHERR 109

  Fly  1019 SGRPNQLCLPQ-QRSRVASMPNTGV------------------EEEYYRLRHFSITGKG-VVNRG 1063
            ...|.....|. |:||:.. |.|.|                  .|:|.|:|.|.|..|| ||:||
 Worm   110 RSTPTVSRRPSLQKSRIME-PRTDVWPEAKPIGLEERFLKLPDSEDYTRVRQFKIDEKGAVVSRG 173

  Fly  1064 DSLKSRRS---RSNNS-----VASSNSSTEHLTTQQQLSAPASVSARTSLASSRESSTSNPGNGP 1120
            ||.:.:|:   :|:.|     |:.|..|.....::.:.|.|. :|...:..:..|.:.::..:..
 Worm   174 DSFRRKRTPTYKSDKSPSPFPVSVSTDSARGSRSESEASEPL-ISDDVAKMTVNEMTNASTSHKT 237

  Fly  1121 YRVLMLGGPAVGKSSLVSQFMTSEYLHAYDTSIDDESGEKAVSVLLSGEESELIFIDHGYTEMTP 1185
            |::.::|....|||||:||.:||||.:|:...|.|.  |..||:.:.|.|.:|:|.:   ::|: 
 Worm   238 YKIYVVGDTGTGKSSLISQLITSEYKNAFADEIQDY--ENTVSICIGGVECDLVFFE---SDMS- 296

  Fly  1186 DECLTNYDPHGYCVIYSAADRSSFSVAEQVLQVLWTNQNIAQKAVILVSNKADLARSRLVTSEEG 1250
            |.|....:.|.:.|:||...:||:..|...|:::...........::..||.||.|.|.||.:|.
 Worm   297 DPCWLTNEIHAFLVVYSIDSKSSWKQAMVALEMIRDRPGTRNLPTLVAGNKIDLERKRTVTKQEV 361

  Fly  1251 KAMATAYDCKFIETSVGINHNVDELLVGLLSQIR------LKLENPEKSR---DLFRKRSIRKSK 1306
            :|...|...:..|.||.::|:||:|||||:::|:      ..|:.|....   |.|.....|.|:
 Worm   362 RAAKAAMGFEHFEISVALDHDVDDLLVGLVAEIQEAFAPESVLQKPSPRHHPIDDFHSAIRRYSQ 426

  Fly  1307 RRACSPLN----AGCLNANTPLGPLGEAVATPPGSAQSSPR 1343
            |:..:|||    ..|    |.|.|.|...........||||
 Worm   427 RKKKAPLNDLEGGKC----TMLSPTGLFAKFKNWRRGSSPR 463

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Rgk1NP_725875.3 DUF2967 459..715 CDD:288079
P-loop_NTPase 1121..1379 CDD:304359 76/237 (32%)
small_GTPase 1121..1286 CDD:197466 57/171 (33%)
Y52B11A.4NP_492856.1 small_GTPase 236..394 CDD:197466 56/164 (34%)
P-loop_NTPase 238..>394 CDD:304359 56/162 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0003805
OrthoInspector 1 1.000 T374698
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR45775
Phylome 1 0.910 0.727 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

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