DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fshr and rk

DIOPT Version :10

Sequence 1:NP_038551.3 Gene:Fshr / 14309 MGIID:95583 Length:692 Species:Mus musculus
Sequence 2:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster


Alignment Length:904 Identity:251/904 - (27%)
Similarity:369/904 - (40%) Gaps:290/904 - (32%)


- Green bases have known domain annotations that are detailed below.


Mouse    18 CHHWL---CHCSNRV----FLCQDSKVTEIPPDLPRNAIELRF---VLTK--------------- 57
            |..||   |||:..:    ..|:...:..:|.:||...:.|..   .|||               
  Fly   144 CERWLQKHCHCTGSLEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEEL 208

Mouse    58 ------------------------------LRVIPKGSFSGFGDLEKIEISQNDVLEVIEADVFS 92
                                          |:.:|..||.|...|..::::.| .|..::.|...
  Fly   209 TLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGN-ALVSLDGDCLG 272

Mouse    93 NLPNLHEIRIEKANNLLY-------------------------INPEAFQNLPSLRYLL------ 126
            :|..|..:|:|  .||.|                         ||.|.|..:|:|..||      
  Fly   273 HLQKLRTLRLE--GNLFYRIPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQI 335

Mouse   127 --ISNTGIKHLPA-----------------FHKIQSLQKV--------------------LLDIQ 152
              ||...:|:|.|                 ..|:..||::                    :||::
  Fly   336 MKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLRWINDTELPRSMQMLDMR 400

Mouse   153 DNINIHIIARNSFMGL---------------SFESV-------ILWLNKNGIQEI---------- 185
            .| .:..|:..:|.|:               ||..:       ||.|::.||||:          
  Fly   401 AN-PLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPR 464

Mouse   186 -----------------HNC-------------------AFNG-TQLDELNLSDNNNLEELPDDV 213
                             .:|                   .||| .||::|.|| .|.::.||.|.
  Fly   465 LKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLS-YNRIKALPQDA 528

Mouse   214 FQGASGPVVLDISRTKVY------------------------SLPNHGLENLKKLRARSTYRLKK 254
            |||.....:||:...::.                        .||..||..|..|:..:..:|::
  Fly   529 FQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLRE 593

Mouse   255 LPSLDKFVMLIEASLTYPSHCCAF-----ANWRRQTSE--------------------------- 287
            .|..|.|..:....|:|..|||||     .:.:::||:                           
  Fly   594 FPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWP 658

Mouse   288 ------------LHPICNKSISRQDIDDMTQPGDQRVSLVDDE---------PSYGKG------S 325
                        :|.....:|:..:....||.|.|..:...:|         |:.|.|      |
  Fly   659 QMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFS 723

Mouse   326 DMLYSEFDYDLCNEFVDVTCSPKPDAFNPCEDIMGYNILRVLIWFISILAITGNTTVLVVLTTSQ 390
            .|...:|...      .|.|.|.|..|.||.|:..:..||..:|.:.:|::.||.||:.||..|:
  Fly   724 GMSTEDFQPG------SVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSR 782

Mouse   391 YKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQTGAGCDAAGFFTVFASELS 455
            .|:.|||||:||||.||..:||||.::|.||..|..::..:||.||....|..:||..|.:||||
  Fly   783 SKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELS 847

Mouse   456 VYTLAAITLERWHTITHAMQLECKVQLCHAASIMVLGWAFAFAAALFPIFGISSYMKVSICLPMD 520
            |||||.|||||.:.||||:.|..::.|..|..||.:||.||...||.|:.|:|.|.|.::|||.:
  Fly   848 VYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGVSDYRKFAVCLPFE 912

Mouse   521 IDS-PLSQLYVMALLVLNALAFVVICGCYTHIYLTVRNPNIVSSSRDTKIAKRMATLIFTDFLCM 584
            ..: |.|..||::|:.:|..||:.:.|||..:|..:|... ..::.|::||||||.|:||||||.
  Fly   913 TTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRGSQ-AWNTNDSRIAKRMALLVFTDFLCW 976

Mouse   585 APILFFAISASLKVPLITVSKAKILLVLFYPINSCANPFLYAIFTKNFRRDFFVLMSKF 643
            :||.||:|:|...:.||::.:|||..|...|:|||.|||||||.||.|::|...|...|
  Fly   977 SPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDCVTLCKHF 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FshrNP_038551.3 LRRNT 17..45 CDD:396168 8/33 (24%)
LRR 43..>271 CDD:443914 82/438 (19%)
leucine-rich repeat 48..71 CDD:275380 9/70 (13%)
LRR 1 49..72 9/70 (13%)
leucine-rich repeat 72..96 CDD:275380 5/23 (22%)
LRR 2 73..97 4/23 (17%)
leucine-rich repeat 97..121 CDD:275380 10/48 (21%)
LRR 3 98..118 9/44 (20%)
LRR 4 119..143 10/48 (21%)
leucine-rich repeat 122..143 CDD:275380 9/45 (20%)
leucine-rich repeat 144..172 CDD:275380 10/62 (16%)
LRR 5 144..169 8/59 (14%)
LRR 6 170..192 10/74 (14%)
leucine-rich repeat 173..194 CDD:275380 11/74 (15%)
LRR 7 193..216 10/22 (45%)
leucine-rich repeat 195..219 CDD:275380 11/23 (48%)
LRR 8 217..240 6/46 (13%)
leucine-rich repeat 220..243 CDD:275380 7/46 (15%)
LRR 9 241..259 4/17 (24%)
GnHR_trans 282..348 CDD:432511 17/119 (14%)
7tm_GPCRs 362..636 CDD:475119 129/274 (47%)
TM helix 1 364..388 CDD:410628 10/23 (43%)
TM helix 2 397..418 CDD:410628 13/20 (65%)
TM helix 3 442..464 CDD:410628 13/21 (62%)
TM helix 4 487..503 CDD:410628 8/15 (53%)
TM helix 5 527..550 CDD:410628 9/22 (41%)
TM helix 6 570..592 CDD:410628 16/21 (76%)
TM helix 7 604..629 CDD:410628 15/24 (63%)
rkNP_476702.1 LRR <157..390 CDD:443914 40/235 (17%)
leucine-rich repeat 158..179 CDD:275380 3/20 (15%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
leucine-rich repeat 205..228 CDD:275380 0/22 (0%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
leucine-rich repeat 253..276 CDD:275380 5/23 (22%)
leucine-rich repeat 277..300 CDD:275380 6/24 (25%)
LRR 292..612 CDD:443914 61/321 (19%)
leucine-rich repeat 301..324 CDD:275380 4/22 (18%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
leucine-rich repeat 349..371 CDD:275380 1/21 (5%)
leucine-rich repeat 372..393 CDD:275380 2/20 (10%)
leucine-rich repeat 394..415 CDD:275380 5/21 (24%)
leucine-rich repeat 418..486 CDD:275380 10/67 (15%)
leucine-rich repeat 441..464 CDD:275378 7/22 (32%)
leucine-rich repeat 487..510 CDD:275380 3/22 (14%)
leucine-rich repeat 511..534 CDD:275380 11/23 (48%)
leucine-rich repeat 535..558 CDD:275380 2/22 (9%)
leucine-rich repeat 559..580 CDD:275380 4/20 (20%)
7tmA_Glyco_hormone_R 754..1028 CDD:320264 129/274 (47%)
TM helix 1 755..781 CDD:320264 10/25 (40%)
TM helix 2 788..813 CDD:320264 15/24 (63%)
TM helix 3 833..863 CDD:320264 18/29 (62%)
TM helix 4 875..897 CDD:320264 10/21 (48%)
TM helix 5 918..947 CDD:320264 11/28 (39%)
TM helix 6 956..986 CDD:320264 19/29 (66%)
TM helix 7 996..1021 CDD:320264 15/24 (63%)

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