DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1Lcsd and Cbx5

DIOPT Version :10

Sequence 1:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster
Sequence 2:NP_001100267.1 Gene:Cbx5 / 300266 RGDID:1306619 Length:191 Species:Rattus norvegicus


Alignment Length:75 Identity:29/75 - (38%)
Similarity:42/75 - (56%) Gaps:3/75 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FVRGRMVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPP-PES 69
            |.||...|||:.. |.:..:.|||:|:||:...::|...|||.:.||:||.||.:.|:... ||.
  Rat   117 FERGLEPEKIIGA-TDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180

  Fly    70 RKGNPRKRKA 79
            .: |..|..|
  Rat   181 AE-NKEKESA 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1LcsdNP_001246478.1 CSD 10..62 CDD:349275 20/51 (39%)
Cbx5NP_001100267.1 CD_HP1alpha_Cbx5 19..68 CDD:349298
CSD_HP1alpha_Cbx5 116..173 CDD:349302 23/56 (41%)
Blue background indicates that the domain is not in the aligned region.

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