Protein Alignment: CHRNB2 and nAChRalpha2

• Sequence 1: NP_000739.1
• Gene: CHRNB2
• HGNCID: 1962
• Length: 502
• Species: Homo sapiens
• Sequence 2: NP_524482.1
• Gene: nAChRalpha2
• FlyBaseID: FBgn0000039
• Length: 576
• Species: Drosophila melanogaster
• Alignment Length: 540
• Identity: 225/541 (42%)
• Similarity: 320/541 (59%)
• Gaps: 88/541 (16%)

Human     3 RRCGPVALLLGFGLLRLCSGVWGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQL 67
            |.|.|:.|||  .||.||..|......:||.:.||  |.||:||||.:|.::.|.|:|.:.|:||
  Fly    21 RHCKPLCLLL--VLLLLCETVQANPDAKRLYDDLL--SNYNRLIRPVSNNTDTVLVKLGLRLSQL 81

Human    68 ISVHEREQIMTTNVWLTQEWEDYRLTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFY 132
            |.::.::||:||||||..||:|::..|.|.|:..:.::.:||:||||||:||||||||.|.|:..
  Fly    82 IDLNLKDQILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTM 146

Human   133 SNAVVSYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLV---------LK 188
            :.|::.|.|.:.|.||||:||:|:|:|::||||||.|.|||.|||||..:|||.         .|
  Fly   147 TKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNK 211

Human   189 SEVA-SLDDFTPSGEWDIVALPGRRNE-------NPDDSTYVDITYDFIIRRKPLFYTINLIIPC 245
            .|:. .|.::.||.||||:.:|..|:|       .|    |.||.::..:|||.||||:||||||
  Fly   212 VEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEP----YPDIFFNITLRRKTLFYTVNLIIPC 272

Human   246 VLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTF 310
            |.|:.|::||||||:|.|||:.||||:||:.|:|.||||:|:|.|||.:||:||||:|||:||..
  Fly   273 VGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGL 337

Human   311 SIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPALLFMQQPR---HHCARQRLRL--------- 363
            |:|.::.:||:|:|.|:||.|.||::..|:::||.||.|:.|:   ...|..::..
  Fly   338 SVVITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINYGLKFSKTKF 402

Human   364 -------------------RRRQREREGAGALFFREAPGADS--CTCFVNRASVQGLAGAFGAEP 407
                               .||.:.|.|||        |.:.  .|...||.|  ||.||.|...
  Fly   403 GQALMDEMQMNSGGSSPDSLRRMQGRVGAG--------GCNGMHVTTATNRFS--GLVGALGGGL 457

Human   408 APVAGPGRSGEPCGCG------------------LREAVDGVRFIADHMRSEDDDQSVSEDWKYV 454
            :.::  |.:|.|....                  |.:|:..|.||..||:.:|:..:..:||.:|
  Fly   458 STLS--GYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHHMQRQDEFNAEDQDWGFV 520

Human   455 AMVIDRLFLWIFVFVCVFGT 474
            |||:||||||:|:...:.||
  Fly   521 AMVMDRLFLWLFMIASLVGT 540

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CHRNB2	NP_000739.1	Neur_chan_LBD	29..234	CDD:308532	101/222 (45%)
		Neur_chan_memb	241..478	CDD:308533	108/286 (38%)
nAChRalpha2	NP_524482.1	Neur_chan_LBD	45..261	CDD:280998	101/222 (45%)
		LIC	47..544	CDD:273305	214/513 (42%)
		Neur_chan_memb	268..543	CDD:280999	108/286 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010				D188416at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			O	PTHR18945
Phylome	1	0.910		0.889	Consistency score
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	4	3.920