DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L1 and kat-60L1

DIOPT Version :9

Sequence 1:NP_647473.1 Gene:YME1L1 / 10730 HGNCID:12843 Length:773 Species:Homo sapiens
Sequence 2:NP_001163523.1 Gene:kat-60L1 / 40715 FlyBaseID:FBgn0037375 Length:673 Species:Drosophila melanogaster


Alignment Length:594 Identity:154/594 - (25%)
Similarity:249/594 - (41%) Gaps:142/594 - (23%)


- Green bases have known domain annotations that are detailed below.


Human    20 INAFHTP-KNTSVSLS---GVSVSQNQHRDVVPEHEAPSSECMFSDFLTKLNIVSIGKGKIFEGY 80
            |.|...| :|.|:..|   |.|.:..:||.|                   .|:.|...|.:..| 
  Fly   136 ITATSRPSRNASLKKSSEGGHSSTAERHRPV-------------------NNLGSNAPGGLGIG- 180

Human    81 RSMFMEPAKRMKKSLDTTDNWHIRPEP---FSLSIP-PSLNLRDLGLSELKIGQIDQLVENLLPG 141
            .|:.:...:|:...:...:   :.|:|   .:..:| ||....:..:|.|:  :.|..::..||.
  Fly   181 GSVPLRSKQRLPTQVSAAE---VAPQPRASQTAQMPFPSQQQDNRWVSSLR--RRDPELQPTLPS 240

Human   142 FCKGKNISSHWHTSHVSAQSFFENKYGNLDI-----------FSTLRSSCLYRHHSRALQSICSD 195
            .....|.||...:.|.||        ||:.:           ..|:|..    ..:|| .::.:.
  Fly   241 INSNANSSSLSQSHHGSA--------GNVGLAGAGAPTPAASMGTMRLG----RPARA-SAMTAA 292

Human   196 LQYWPVFIQSRGFKTLKSRTRRLQSTSERLAETQNIAPSFVKGFLLRDRGSDVESLDKLMKTKNI 260
            |:      :||..:.|  |.|:| ||:.:|    |:....||          ..|||     :|.
  Fly   293 LR------KSRSVERL--RARKL-STNTQL----NLKHKPVK----------KNSLD-----ENS 329

Human   261 PEAHQDAFKTGFAEGFLKAQAL--TQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTG 323
            ....|||  |...|....||:|  :..|.....:|:...|..|.:.::                 
  Fly   330 NSDDQDA--TTSLEDNSHAQSLATSHNTPKCSPKTKAKHFSPLGYEVH----------------- 375

Human   324 LDSAVDPVQMKNVTFEH-------VKGVEEAKQELQEVV-------EFLKNPQKFTILGGKLP-K 373
               .||.:: |::...|       |.|:.|||..|||.|       ||.|        |.:.| :
  Fly   376 ---LVDTLE-KDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFK--------GIRRPWR 428

Human   374 GILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFID 438
            |:|:|||||||||:||:|||.|....|:..|.|.....:.|.....:|.||..|:..||..||||
  Fly   429 GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFID 493

Human   439 ELDSVGGKRIESPMHPYSRQTINQLLAEMDG----FKPNEGVIIIGATNFPEALDNALIRPGRFD 499
            |:|::...|.....|..||:...:||.:|||    .:..:.::::.|||.|..:|.|..|  ||:
  Fly   494 EIDALCASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRR--RFE 556

Human   500 MQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA---ALKAAVDG 561
            .::.:|.|:...|:.:||..|..:....|::..||.....|:||:::.|:...|   |::..:.|
  Fly   557 KRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRLISG 621

Human   562 KEMVTMKEL 570
            :....:|::
  Fly   622 RTPDQIKQI 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1L1NP_647473.1 P-loop_NTPase 331..>395 CDD:304359 32/78 (41%)
FtsH_fam 333..766 CDD:273520 84/260 (32%)
AAA 375..506 CDD:278434 50/134 (37%)
Peptidase_M41 586..764 CDD:279742
kat-60L1NP_001163523.1 AAA 426..565 CDD:214640 53/140 (38%)
AAA 430..563 CDD:278434 50/134 (37%)
Vps4_C <638..671 CDD:286426
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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