DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: HMG20B and tHMG2

Sequence 1:NP_006330.2 Gene:HMG20B HGNCID:5002 Length:317 Species:Homo sapiens
Sequence 2:NP_001163689.1 Gene:tHMG2 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster

Alignment Length:105 Identity:24/106 (23%)
Similarity:46/106 (43%) Gaps:10/106 (9%)


Human    70 PKAPVTGYVRFLNER-REQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKE 133
            ||.|::.::.::|.. |:.||..|||....|::...|..|..:....|..:.:.|.:...:|.::
  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73

Human   134 LRAY-----QQSEAYKMCTEKIQEKKIKKEDSSSGLMNTL 168
            |..:     .|:|::    ..|.|..:....|.:....||
  Fly    74 LEKWNAFKEHQTESF----PHIYEAPLSSRFSKTNQRPTL 109

Known Domains:


GeneSequenceDomainRegion External IDIdentity
HMG20BNP_006330.2 HMGB-UBF_HMG-box 70..135 CDD:238686 17/66 (26%)
conj_TIGR03752 195..>266 CDD:274765
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 17/66 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.