DRSC/TRiP Functional Genomics Resources

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Protein Alignment: HMG20B and CG12104

Sequence 1:NP_006330.2 Gene:HMG20B HGNCID:5002 Length:317 Species:Homo sapiens
Sequence 2:NP_001261267.1 Gene:CG12104 FlyBaseID:FBgn0035238 Length:250 Species:Drosophila melanogaster

Alignment Length:85 Identity:19/86 (22%)
Similarity:42/86 (49%) Gaps:2/86 (2%)


Human    60 KKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
            :::.:.:...|..|:..:..|..:....|:.::|.....::..::...|..|..|:|..|....|
  Fly    66 QQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPTCSLEQMQVIVQTMWESLDETQKNVYALRHE 130

Human   125 REKQQYMKELRAY--QQSEA 142
            :||::|::.:|.|  |.||:
  Fly   131 QEKREYVRLMRGYRHQLSES 150

Known Domains:


GeneSequenceDomainRegion External IDIdentity
HMG20BNP_006330.2 HMGB-UBF_HMG-box 70..135 CDD:238686 14/65 (22%)
conj_TIGR03752 195..>266 CDD:274765
CG12104NP_001261267.1 HMG-box 76..140 CDD:238037 14/64 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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