DRSC/TRiP Functional Genomics Resources

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Protein Alignment: HMG20B and CG32202

Sequence 1:NP_006330.2 Gene:HMG20B HGNCID:5002 Length:317 Species:Homo sapiens
Sequence 2:NP_730354.2 Gene:CG32202 FlyBaseID:FBgn0052202 Length:141 Species:Drosophila melanogaster

Alignment Length:68 Identity:21/69 (30%)
Similarity:30/69 (43%) Gaps:18/69 (26%)


Human    18 KAPGQHGGFVVTVKQERGEGPR----AGEKGSHEEEP------VKKRGWPKGKKRKK--ILPNGP 70
            :||...|   .|.::.||..|:    |.|.|:...||      .:|   |:.:|.|:  |.||..
  Fly    69 EAPHPKG---KTEQKRRGPKPKNKQAADETGAPGSEPGPNTPAARK---PRKQKAKQAPINPNPV 127

Human    71 KAP 73
            .||
  Fly   128 IAP 130

Known Domains:


GeneSequenceDomainRegion External IDIdentity
HMG20BNP_006330.2 HMGB-UBF_HMG-box 70..135 CDD:238686 2/5 (40%)
conj_TIGR03752 195..>266 CDD:274765
CG32202NP_730354.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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