DRSC/TRiP Functional Genomics Resources

Multi Sequence Alignment :

Domains

Index TaxID Gene Name GeneID Protein ID Domain
start
Domain
stop
Domain
name
Domain
description
external_id
hs 9606 ROGDI 79641 XP_006721010.1 18 283 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
mm 10090 Rogdi 66049 NP_573448.2 18 276 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
rn 10116 Rogdi 287061 NP_001020035.1 18 276 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
xt 8364 rogdi 779520 XP_002941090.1 19 277 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
dr 7955 rogdi 335642 NP_956257.1 15 273 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
dm 7227 rogdi 39917 NP_730244.1 93 >280 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
ag 7165 rogdi 1277238 XP_061504552.1 - - - - -
ce 6239 H14A12.3 176058 NP_498641.1 90 >272 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
is 6945 rogdi 8051825 XP_029848679.1 15 >237 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
sc 4932 RAV2 851784 NP_010488.1 26 341 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031
sp 4896 rav2 2541012 NP_595763.1 13 269 Rogdi_lz Rogdi leucine zipper containing protein; pfam10259 CDD:463031

Highlight Region

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Alignment

Alignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References

Download raw alignment output file

Download fasta input file



Note:   &mbsp 2019, we've been having trouble with some alignments and are looking into the problem. If the alignment didn't work, please try again. If it still doesn't work, please download the fasta file and align off line. We're looking into it. Thanks.

hs  MA--------------------------------------------------TV------------------------------------------------------------------ [4]
mm  MA--------------------------------------------------TA------------------------------------------------------------------ [4]
rn  MA--------------------------------------------------TA------------------------------------------------------------------ [4]
xt  MA--------------------------------------------------TA------------------------------------------------------------------ [4]
dr  ------------------------------------------------------------------------------------------------------------------------ [0]
dm  MAQSTTN-------------------NWSFQPLHRQRS--------------TSGYPQHVLNTVPETA------------VLTTPPPTRKP---------------LTIQIAGVAAAESG [60]
ag  MGSRCCNIFPLCISANAERDVECSGSNWFTRPHSRRKSGKKVKVTFSDQLDTTASDDGSVPSTSPSPSTSAQARWRYLEQIFVPPSPEAAPNRSGPAFDRTSSLRQSGTSYASVGSASSG [120]
ce  MEVQSLTI--------------------------------------------TTNYP-------PKPA---------------SPNPQD------------------------------- [23]
is  ------------------------------------------------------------------------------------------------------------------------ [0]
sc  MS------------------------------------------------------------------------------VDLFPNDRF------------------------------- [11]
sp  MQ--------------------------------------------------TE--------------------------I--------------------------------------- [5]
                                                                                                                            

hs  -------------------MA-ATAAERAVLEEEFRWLLHDEVHAVLKQLQDILK----------EASLRFTLPGSGTEGPAKQENFIL----GSCGTDQVKGVLTLQGDALSQADVNLK [90]
mm  -------------------MA-ASAAERAVLEEEFRWLLHAEVHAVLRQLQDILK----------EASLRFTLPGPSTEGPAKQENFIL----GSCGTDQVKGTLTLQGDALSQADVNLK [90]
rn  -------------------MA-ASAAERAVLEEEFRWLLHAEVHAVLRQLQDILK----------EASLRFTLPGPSTEGPAKQENFIL----GSCGTDQVKGVLTLQGDALSQADVNLK [90]
xt  -------------------AASASSTERSVLEEEFKWLLKEEVHSVLKQLQDILK----------EASRRFTLPGGVGEGPTKQENFAL----GTTSSDQVKGILTLQGDTLCQAEVNLK [91]
dr  -------------------MTAASQAERTVLEEEFNWLLKEEVHAVLKQLQDILK----------EASRRLSMPSPGLEGQLKQENFIL----GSSTMDQVKGVLTLQGEALTQADINIK [87]
dm  -HKRRFLAARKKPKSAMKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILV----------ECAHRFPVPLYENEGK-KTEKFIL-----TVSPDQLKAVLTLTGDAITQADISFK [163]
ag  PYNRRPPPQRKVGQK----MADCEKEEALNLQVEFEWVLHEEVHSVLKQLHVILV----------ECAHRFPVPLYGNEGK-KQDKFVL-----TAAPEQLKCIVTLTGDSITHADINFK [220]
ce  -------------------IRDTIRSNKTN---ENLWIQRKDVDTTLRSALEHLKACCIVLNLSAKCDERLNVAVSHG----TTEKYQL--MSRTGSSDNLKAAVTLLDDNVIQAEVTVK [115]
is  -------------------MAEADVDEIEALHAEFEWLLQEEVNIVLEQLQGVIM----------ECSKRFPVSIPDVDAPVKSEKFFMTSTSSTSSSDQIKVVVTLTGDNISHADITLR [91]
sc  -------------------GAEDKYDNFKDAVKECSWLIEEIVKPQLPNIIDNFSKCLEML----ESDQIFKMPVSNG---IPNE------SNKQNDSPTVKGVITRQGQYIVDFHIVVR [99]
sp  --------------------------DASVIVKEKEWLETNVLPEFWESMSEGLK----------EALNLIS----------SDDPTVL--VFTSPKTDAVKGIVSRSSSNVVRVNVTAK [77]
                              :      *  *:    :     .    :           :.   :             :               :*  ::  .. :   .:  :

hs  MPRN-NQLLHFAFREDKQWK-------------------LQQIQ---DARNH----------VSQAIYLL--------TSRDQSYQFKTG--------AEVLKLMDAVMLQLT------- [154]
mm  MPRN-NQLLHLAFREDKQWK-------------------LQQIQ---DARNH----------VSQAIYLL--------ANRDESYQFKTG--------AEVLKLMDAVMLQLT------- [154]
rn  MPRN-NQLLHFAFREDKQWK-------------------LQQIQ---DARNH----------VSQAIYLL--------ANRDESYQFKTG--------AEVLKLMDAVMLQLT------- [154]
xt  TLRT-NQLLHFAFREDKQWK-------------------MQQIQ---DARNH----------VNQAIYLL--------TNRGENYTFQTG--------AEVLKLMDAVMLQLT------- [155]
dr  VAKS-SQVMHFAFRDDKQWK-------------------LQQIQ---DARNH----------VNQALQLL--------SSRDDSYHFKTG--------AEVNKLMDAIMLQLT------- [151]
dm  LCKAPSQTQRTSITHDSPWK-------------------LQQVQ---DAANH----------LQTAINHI--------DDVDDSYHFKTS--------DEVLHVIGNILDALQ------- [228]
ag  VQRQQQQIQRTSITQDYPWK-------------------IQQVQ---DAANH----------LQQAINHI--------DNVDSAYHFKTS--------DEVLHILGNILGALQ------- [285]
ce  YPKAGGGYYRAVAQPDVQWK-------------------LQQLQ---DLGNHISRVTITLCDLQHEVNLLK------GDGERDAFTLATG--------ARILEELKLTMNEIS------- [192]
is  IPKHAMPNLRTIVQNDCQWK-------------------LQQVQ---DAGNN----------LLQALSLLT------PPPLKTRFEFKSA--------EEVTQLMTTIMGCLQ------- [158]
sc  FPQF-QRGKQVMFRMNTGLNFLLIQFSKIMTHLKNILEILNQLQVATDVSEFVSKFGVAMELLNHSLILLQNPPRDLVFPEDNNFAMKEMFQDCYSVCESTAHILGLELTLCRNELCIEL [218]
sp  VGRT-THVLK--LKDSAIIH-------------------LDQIL---NLSNY----------MHYALYCLP------RLRHNTERAIKEL--------QEILHAIVCLLHSIMQE----- [143]
      :      :     .   :                   ::*:    :  :           :   :  :                :               . :   :           

hs  ------------------------RARNRLTTPATLTLPEIAASGLT-------------------------RMFAPALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVL [225]
mm  ------------------------RARSRLTTPATLTLPEIAASGLT-------------------------RMFAPTLPSDLLVNVYINLNKLCLTVYQLHALQPTSTKNFRPAGGAVL [225]
rn  ------------------------RARNRLTTPATLTLPEIAASGLT-------------------------RMFAPTLPSDLLVNVYINLNKLCLTVYQLHTLQPTSTKNFRPAGGAVL [225]
xt  ------------------------RARNRLTTPATMTLPEVATSGLT-------------------------KMFTPALPPDILLNFYVNVNKLCLLVYQLHALQPNSTKNFRPSGSAVL [226]
dr  ------------------------RARNRLTTPASMTLPELAASGLM-------------------------KMFTPPMPGDVMVNFYINLSKLCLTVYQLHVLQPNTTKNFKPAGSSVL [222]
dm  ------------------------RGRNSLLVPKKKPIDELIKGRNM-------------------------KSLVPNLPEDLAVSFYLQSHKLIIAVYQL------------------- [280]
ag  ------------------------RGRTSLVVPRKKPIDELMKSRNM-------------------------KALSPNLPEDLAISFYIQSHKLIFVAYQL------------------- [337]
ce  ------------------------LARNSIMLPRKRSLLELCYFPPT-------------------------RKFVPPLPQDQLISFYISCCRLVCASYQM------VPKTVHPQGLSVF [257]
is  ------------------------RGRASLIIPKKRTIEEILGSRNMNSSAALHTGTAIPARSSRTPLMLQQKSLQPPLPSDIAASFYVQSHKLVFAVYHIH------------------ [236]
sc  RNLIKVTKKPWCEIDSKTGRSFCDQIRNQVTNERNKTLSKILSENGV-------------------------QVQDSTLLNHIISSFQSEAITL-------------------PEAQELL [294]
sp  ----ESEKE---EIPSNAS-SISLKSQNSIVSRTSNPFSCLNHSPRQ-----IH-------KTVRN------HLFSPPLPSNLALSFSISNASVCLHLFRLS------------------ [219]
                              :  :    . .:  :                               :   . :  .   ..  .   :                          

hs  HSPGAMLDPLTAHSEWGSQRLEVSHVHKVECVIPWLND---------ALVYFTVSLQLCQ-QLKDKISVFSSYWSYR-----PF---- [294]
mm  HSPGAMF-------EWGSQRLEVSHVHKVECVIPWLND---------ALVYFTVSLQLCQ-QLKDKIAVFSSYWSSR-----PF---- [287]
rn  HSPGAMF-------EWGSQRLEVSHVHKVECVIPWLND---------ALVYFTVSLQLCQ-QLKDKISVFSSYWSSR-----PF---- [287]
xt  HNPGAMF-------ELNNQRFEVSHVHKVECVVPWLND---------ALVFFTVSLQLCQ-QLKDKISVFSSYWNFR-----PY---- [288]
dr  HNPGAMF-------EHNNTKFEVSHVHKVECVVPWLND---------TLVFFTISLQLCQ-QLKDKISVFSSFWNYR-----PF---- [284]
dm  ------------LNNQGTMRFDSRQ---AEASVQWLND---------VLLLLMNGQKLCQ-QLKDKISVFSVYKDFTVGSRSPSALSY [343]
ag  ------------TNFQGTMKFDSCQ---AECSVPWLNE---------VLVLFTVALQLCQ-QLKDKISVFSQYKDFTVGSRSPSALSY [400]
ce  M---------------------------AESQLPHLDD---------VIKHLNTVMAILQ-KLINYLSATMS---------------- [292]
is  ------------KDSHGQPKFDVFH---AEASVPWLSE---------VLVLFTIALQLCQ-QLKDKVGVFYQFRDFQIP--------- [290]
sc  R-------RGV--------TFDNRVVMECEKLIVSTSD--------PTLISISAKLNSLKASMANHQANLVASKQLSTYK-------- [351]
sp  ------------GPNEVLESFAKNSVD-IEMLKPFVSQRIDAFSQDPILLAVTAKLSALQ-KKVNDVS-----YRFKTISSSLYGAK- [287]
                                 *      .:          :  .       : .  :  .                    


Alignment Details

Alignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References
  • Strategy: Auto
  • Scoring Matrix: BLOSUM62
  • Gap Penalty: 1.53
  • Offset Value: 0.0