Domains
Highlight Regionselect the species and region you wish to highlight AlignmentAlignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References
Download raw alignment output file Note:   &mbsp 2019, we've been having trouble with some alignments and are looking into the problem. If the alignment didn't work, please try again. If it still doesn't work, please download the fasta file and align off line. We're looking into it. Thanks. hs  -----MNIHRST----PITI---------------------------------------------------------------------------------------------------- [11]
mm  -----MNIHRST----PITI---------------------------------------------------------------------------------------------------- [11] rn  -----MNIHRST----PITI---------------------------------------------------------------------------------------------------- [11] xt  -----MNIQRSN----PITI---------------------------------------------------------------------------------------------------- [11] dr  -----MNIQRSS----PINI---------------------------------------------------------------------------------------------------- [11] dm  -----MDNSS-------------------------------------------------------------------------------------------------------------- [5] ag  -----MNTHNTT----TVNVAPSAPVV----------------HINELLPLLHKPDEQVGGSVGFTPLVANVAGSDGAAILTGASSVSDSASEPVRVDPDAGAGSTGAPN-VNVSLVANS [94] ce  -----MARTKCK----------------------------TKTVANPRTGV-RKTAKDLSEPVRQDAVSRRRP--------TTLPFVGNTSSRPRVF----------------YDVLAKK [62] is  -----MNIAR-------LSV---------------------------------------------------------------------------------------------------- [8] sc  -----MDDY----------------------------------HVNTA--------FSMGRGNQQDD---------------GNSESNSMHTQPSTM--------------------APA [38] sc6 -----MDEYS------SIYSQPKTPRLKQEGFPDSIGDQHEKALIDENG----EEDKKMAST---------------------EGTTGDSRSTPLTVSIPTFENVQALPTPMTYTPLSPG [84] sp  -----MSEKKHSCEEKSLQLYPLSNKIR---------------HVNPN----------ISALPSETDI--------------SESLTNDLTK---------------------------- [48]                                                                                                                              hs  -------------------ARYGRS----------------------------------------------------------------------------------RNKTQDFEELSSI [30] mm  -------------------ARYGRS----------------------------------------------------------------------------------RNKTQDFEELSSI [30] rn  -------------------ARYGRS----------------------------------------------------------------------------------RNKTQDFEELSSI [30] xt  -------------------TRYGRS----------------------------------------------------------------------------------RNKTQDFEELSSI [30] dr  -------------------SRYGRS----------------------------------------------------------------------------------RHKAHDFEELSCL [30] dm  ----------------GQNSRTASS-------------------------------------------------------------ASTSKIV--------------NYSSPVSPGVAAA [34] ag  NLAILNRLLSAHMGASGHGSEQGRNS--------GGSGSSSSSGGSSNSSHKKCPYHRQCSSH--HHLHRHL----QHQQ----QAASGSSFAPAF----------CRYRNDGSSSSSSS [186] ce  NVVFPNV--------KAEYHYRVRNAPKIDPKNFGTTLPICYSSIGPAKTLELRPLGRL-PPHIIKALNDHYVQLTR------GSMVPAADLYNNGDHPAEQRIPTMLNENEYLRLIQEL [167] is  -------------------DIQAAQ----------------------------------------------------------------------------------EKRQQNFDKVPD- [26] sc  TLRMMGK---------SPQQQQQQN----------------------------TP------------------------------LMPPADIKYAN--------NGNSHQAEQKERQVEL [83] sc6 NLSM------------SPIDQSSLN----------------------------IPKRRS---H--ARLLDDMLSVTQPNQRVVSELIAPANLSPQRV----VSLPTVTEEALVNDSV--D [153] sp  -LEISNY----------------------------------------------APFNR--------------------------DLETFSDLIFG------------------------L [71]                                                                                                                              hs  RSAEPSQSFSPNLGSPSPP---------------------------------------ETPNLSHCVSCI-GKYLL---------------------LEPLEGDHVFRA-------VHLH [82] mm  RSAEPSQSFSPNLGSPSPP---------------------------------------ETPNLSHCVSCI-GKYLL---------------------LEPLEGDHVFRA-------VHLH [82] rn  RSAEPSQSFSPNLGSPSPP---------------------------------------ETPNLSHCVSCI-GKYLL---------------------LEPLEGDHVFRA-------VHLH [82] xt  RSTEPSQSFSPNLGSPSPP---------------------------------------ETPNSSHCVSCI-GKYLL---------------------LEPLEGNHVFRA-------LHLH [82] dr  RTTESSQSFSPNLGSPSPP---------------------------------------ETPDSSHCISCI-GNYLL---------------------LEPIEGDHVFRA-------THLH [82] dm  TSSSSSSSSSGMSSSQEDTVLGLFTPKKEFPNAKMLQTIREKLMTPGGACDLLALGIAAEPTDQQPVKLIQQRYLISAQPSHISAAVAAKTPASYRHLVDLTASNL-RC-------VDIF [146] ag  SSSSSGSNGSGNASAISYPVRD-------------------------------AISANVSPPPVNAVILV-DRYLL---------------------MEPVEGNNLYRC-------YDIK [246] ce  EEEEKSKQFSATSSSAPH----------------------------------------VNPYS--------AQHLVN-----------GEIIG---IFVIYGTGLVTRA-------VCSQ [218] is  GVCATGGNLSPNLQPATPPV----------------------------------FPCNREPFAASLVG---GRYIL---------------------LEQLEGSAMYRS-------VNVH [81] sc  EGKSRENAPKPNTTSQSRVSSSQGMP---------------------------------------------KQF-------H------RKSLGDWEFVETVGAGSMGKVKLA----KHRY [141] sc6 SDNYTKEPYFPESSSSTE-KCDDDIF---------------------------------------------QGFLL----DH------WDRPLLWKKVRPIGSGNFSTVLLYELMDQSNP [217] sp  TNIQKKSLYSLQLGRSRGYALYSDEN---------------------------------------------EKYL-------------------WSINTKITSTEQREVLLV--KSNNKK [125]                                                                                                                              hs  SGEELVCKVFD-------------------------ISCYQESL---------APCFCLSAHSN--------------------INQITEII-LGETKAY-------------------- [127] mm  SGEELVCKVFE-------------------------ISCYQESL---------APCFCLSAHSN--------------------INQITEIL-LGETKAY-------------------- [127] rn  SGEELVCKVFE-------------------------ISCYQESL---------APCFCLSAHSN--------------------INQITEIL-LGETKAY-------------------- [127] xt  SGEEFLCKVFD-------------------------IRCYQETL---------APCFCLPIHSN--------------------INQIAEII-LGETKAY-------------------- [127] dr  SGEELVCKVFD-------------------------ISRYQESL---------AAYFVLGTHEN--------------------INQIVEIL-LGDTRAY-------------------- [127] dm  TGEQFLCRIVN--------------------------EPLHKVQ---------RAYFQLQQHDEE--------LRRSTIYGHPLIRPVHDIIPLTKDRTY-------------------- [203] ag  SHEELVCKIAN--------------------------NPCSNLL---------TAHFRLDGHRH--------------------VNSLHKVI-QGNNQTY-------------------- [290] ce  TREMFTAHVLP-------------------------EWKASKVI----------DVIRRLQIPTDISSMTADEIRLSELC----ISKRMEII--KSNDRY-------------------- [277] is  TQEEFSCKVVP-------------------------SERCRQAL---------AGHLRLDGRDH--------------------VNQVEEVL-VGDSLTY-------------------- [126] sc  TNEVCAVKIVNRATKAFLHKEQMLPPPKNEQDVLERQKKLEKEISRDKRTIREASLGQILYHPH--------------------ICRLFEMC-TLSNHFY-------------------- [220] sc6 KLKQVAVKRLK-YPEELSNVEQINTSLRYKETLSRLENSLTREL----------QVLKSLNHPC--------------------IVKLLGI----NNPIFVTSKKPLCDLIIKTPRALPP [302] sp  FDTSIVLKHTHLSSKS-----------QNEKKAR--VKVFRQEI----------WALKTLSHPC--------------------VVQLLNYY-VSSAELI-------------------- [181]            :                                 .                                          :          .                         hs  --VFFER-------------SYGDMHSFVRTC-KKLREEEAARLFYQIASAVAHCHDGGLVLRDLKLRKFIFKDEER--------------TRVKLESLEDAYILRG-DDDSL-SDKHGC [215] mm  --VFFER-------------SYGDMHSFVRTC-KKLREEEAARLFYQIASAVAHCHDGGLVLRDLKLRKFIFKDEER--------------TRVKLESLEDAYILRG-DDDSL-SDKHGC [215] rn  --VFFER-------------SYGDMHSFVRTC-KKLREEEAARLFYQIASAVAHCHDGGLVLRDLKLRKFIFKDEER--------------TRVKLESLEDAYILRG-DDDSL-SDKHGC [215] xt  --VFFER-------------SHGDMHSFVRTC-KKLKEEDAARLFYQIVSAVAHCHDGGIVLRDLKLRKFVFNDGER--------------TKVKLETLEDAYVLAG-TDDSL-SDKHGC [215] dr  --VFFER-------------SHGDMHSFVRTC-KKLREEEAARLFHQIASAVAHCHDNGLVLRDLKLRKFVFKNEDR--------------NHVKLESLEDTFLLEG-GNDSL-SDKHGC [215] dm  --ILIAPVPQERDSTGGVTGVYENLHTYIRHA-KRLCETEARAIFHQICQTVQVCHRNGIILRDLKLKRFYFIDEAR--------------TKLQYESLEGSMILDG-EDDTL-SDKIGC [304] ag  --LLYSP-------------SEGDLHSYVRVR-KRLREPEARRLCRQMCEVVKSCHEQGIVLRDLKLRKFVFADRER--------------TQLKLESLEDAVVLDDPAEDLL-QDKRGC [379] ce  --ILMNPC------------ESATIHSYATERLDEITENDVMSIYQKVVEIVRFCHSRKVILQNFKPRSFYLKKDAH------------NKWVVRPCFLQDMSCEEDQSEAQF-TRRSVC [370] is  --VFFKR-------------SYGDLHSYVRAK-RRLREPEALCLFHQVASAVQACHEAGVVLRDLKLRKFVFEDPER--------------TRLKLETLEDAVVLEDPSSDAL-SDKHGC [215] sc  --MLFEYV------------SGGQLLDYIIQH-GSIREHQARKFARGIASALIYLHANNIVHRDLKIENIMISDSSE----------------IKIIDFGLSNIYD--SRKQL-HTFCGS [306] sc6 CDMIMSYC------------PAGDLLAAVMARNGRLEAWLIQRIFTEVVLAVKYLHENSIIHRDLKLENILLKYSFDDINSFRDSPIYCKQNFIELADFGLCKKIE--NNEMC-TARCGS [407] sp  --LVENYC------------MGGDLYHYTKKHHSDFSLEFVGRIFSELVHTVAYLHSKCLIHRDLKLENILLTQPYNVIKTIDNWKNY-PNALIQISDFELSIFVD--SKNHLVQSSCGS [284]       :                     :          :           :   :   *    : :::* . : :                      .   :                      hs  PAYVSPEILNTS--GSYSGKAADVWSLGVMLYTMLVGRYPFHDIEPSS--LFSKIRRGQFNIPE--TLSPKAKCLIRSILRREPSERLTSQEILDHPWFS-------------------- [309] mm  PAYVSPEILNTS--GSYSGKAADVWSLGVMLYTMLVGRYPFHDIEPSS--LFSKIRRGQFNIPE--TLSPKAKCLIRSILRREPSERLTSQEILDHPWFS-------------------- [309] rn  PAYVSPEILNTN--GSYSGKAADVWSLGVMLYTMLVGRYPFHDIEPSS--LFSKIRRGQFNIPE--TLSPKAKCLIRSILRREPSERLTSQEILDHPWFS-------------------- [309] xt  PAYVSPEILNTN--GSYSGKAADVWSLGVMLYTMLVGRYPFHDIEPSS--LFSKIRRGQFNIPE--TLSPKAKCLIRSILRREPSERLTSQEILDHPWFS-------------------- [309] dr  PAYVSPEILNAN--GSYSGKAADVWSLGVMLYTILVGRYPFHDVEPSS--LFSKIRRGQFSIPE--TLTPKARCLIRSILRREPAERLTSREILDHPWFL-------------------- [309] dm  PLYTAPELLCPQ--QTYKGKPADMWSLGVILYTMLVGQYPFYEKANCN--LITVIRHGNVQIPL--TLSKSVRWLLLSLLRKDYTERMTASHIFLTPWLRE------------QRP---- [402] ag  PAYVSPEILRVN--TTYSGKAADMWSLGVILYTMLVGRYPFNDSEHAS--LFAKISRGQFTVPE--CLSSKARCMIRALLRRDPEERIASEDVLHHPWLL-------------------- [473] ce  VPFMAPEMLTAE-SRTHHSYSTELWGLGVLLYILLTGKYPFHENSMPL--LFRTIKFKQHRWPF-NFISSKSRNIVNMLLKKAPATRMNLEDLWNQ------VNG--------DFP---- [468] is  PAYVSPEILTTSAGGRYSGRAADCWSLGVLLYTLLVGRYPFHDSDPGA--LFAKIRRGVFSVPE--SLGPRARCLVRSLLRKDPSERLTAEEVLGHPWFAR------------RK----- [314] sc  LYFAAPELLKAN---PYTGPEVDVWSFGVVLFVLVCGKVPFDDENSSV--LHEKIKQGKVEYPQ--HLSIEVISLLSKMLVVDPKRRATLKQVVEHHWMVRGFNG--------PPP---- [407] sc6 EDYVSPEILMGV---PYDGHLSDTWALGVILYSLFEDRLPFD-----------------------------------------------------------------------PPP---- [449] sp  QEYAPPEVYMGI---AHDGFRADAWSLGIVLFALLEGRLPFD------------------SYPT-----------------LDPEN---------------------------------- [332]       : .**:        : .   : *. *::*: :.    **                                                                                hs  ------------------------------------------------------------------------------------------------------------------------ [309] mm  ------------------------------------------------------------------------------------------------------------------------ [309] rn  ------------------------------------------------------------------------------------------------------------------------ [309] xt  ------------------------------------------------------------------------------------------------------------------------ [309] dr  ------------------------------------------------------------------------------------------------------------------------ [309] dm  ----FHMYL--------------------------------------------------------------------------------------------------------------- [407] ag  ------------------------------------------------------------------------------------------------------------------------ [473] ce  -EIRCRSNI-----------------ILKKQDMIVKMD--------LFEM-----------------------------------------------------YYNTYKDRLLP------ [503] is  ------------------------------------------------------------------------------------------------------------------------ [314] sc  ------SYL---PKRVPLTIEMLDINVLKEMYRLEFIDDVEETRSVLVSIITDPTYVLLSRQYW-TLAAKMNAESSDNGNAPNIT-----------------------ESFEDPTRAYHP [494] sc6 ------------------------------------------------------------------------------------------------------------------------ [449] sp  --VRIKRYVQR-----------------------------------LVRC---------------------------------------------------------------------- [345]                                                                                                                              hs  ------------------------------------------------------------------------------------------------------------------------ [309] mm  ------------------------------------------------------------------------------------------------------------------------ [309] rn  ------------------------------------------------------------------------------------------------------------------------ [309] xt  ------------------------------------------------------------------------------------------------------------------------ [309] dr  ------------------------------------------------------------------------------------------------------------------------ [309] dm  ----------------------------------------------------------------------------------PVD----------------------------------- [410] ag  ------------------------------------------------------------------------------------------------------------------------ [473] ce  ---------------------KNVLPM----------------------------------YEEMKA----------------------CRNDST-------------ILTEMAKRD--- [530] is  ------------------------------------------------------------------------------------------------------------------------ [314] sc  MISIYYLTSEMLDRKHAKI-RNQ--------QQRQS---HENIEKLSEIPESVKQRDVEVNTTAMKSEPEATLATKDT--SVPF-----TPKNSD-GTEPPLHVLIPPRLA-MPEQAHTS [593] sc6 ---------------------------NASARQR-------------------------------------------------------------------------------------- [456] sp  ------------------------------------------------------------------------------------------------------------------------ [345]                                                                                                                              hs  ------TD-------------------------------------------------------------------FS-VSNSAYGAKEV------------------------------- [324] mm  ------TD-------------------------------------------------------------------FS-VSNSGFGAKEA------------------------------- [324] rn  ------TD-------------------------------------------------------------------FS-VSNSGFGAKEA------------------------------- [324] xt  ------TD-------------------------------------------------------------------FN-ALNSGCGAKEV------------------------------- [324] dr  ------AS-------------------------------------------------------------------ITPAVNHGRNEREL------------------------------- [325] dm  --VEVAED-------------------------------------------------------------------WSDAEEDEGTAADAMDDD--------------------------- [434] ag  ------HD-------------------------------------------------------------------DSKDHAYGGLHSSSRSSSSGTA----------------------- [497] ce  --FRSIQE----QMKRRIETKP----TEYQTL---------VMQVRLQQINQLFFEKE-----------------VSQAQKQHRAPRLV------------------------------- [583] is  -----CAT-------------------------------------------------------------------ASSVHREGCLNREDAS----------------------------- [333] sc  PTSRKSSDNQRREMEYAL--SPTPQGNDYQQFRVPSTTGDPSEKAKFGNIFRKLSQ--------RRKKTIEQ----TSVNSNNSINKPV--QKTHSRAVSDFVPGFAK-PSY-------- [688] sc6 --SRATSH---------------------------------------------------------------------------------------------------------------- [462] sp  ------------DYTWHLCKSP-------------------------------------------------------------------------------------------------- [355]                                                                                                                              hs  ---------------------------------SDQLVPD-----------------------------VNMEEN--------------------------------------------- [337] mm  ---------------------------------CDQLVPD-----------------------------VNMEEN--------------------------------------------- [337] rn  ---------------------------------CDQLVPD-----------------------------VNMEEN--------------------------------------------- [337] xt  ---------------------------------SDQLVPD-----------------------------VNMDED--------------------------------------------- [337] dr  ----------------------------------DQMVPE-----------------------------ANMEEE--------------------------------------------- [337] dm  ---------------------------------EEGLCPL----------------------------GDKHEYEDIG------------------------------------------ [451] ag  --------------------------------FDDHCVPE---------------------------WYDPTDENDIGG-----------GSS--------------------------- [520] ce  ----QLKCSDIS---------------------KELLLPG-------------------------------------------------------------------------------- [598] is  ---------------------------------TDQTVPE---------------------------YAAPPEAM--------------------------------------------- [348] sc  ---------------DSNYTMNEPVKTNDSRGGNKGDFPA---LPADAENMVEKQREKQIEEDIMKLHDINKQNNEVAK-----------GSGREA--YAAQKFEG------------SD [765] sc6 ------------------------------------------------------------------------------------------------------------------------ [462] sp  ------------------------------------------------------------------------------------------------------------------------ [355]                                                                                                                              hs  ------------------------------------------------------------------------------------------------------------------------ [337] mm  ------------------------------------------------------------------------------------------------------------------------ [337] rn  ------------------------------------------------------------------------------------------------------------------------ [337] xt  ------------------------------------------------------------------------------------------------------------------------ [337] dr  ------------------------------------------------------------------------------------------------------------------------ [337] dm  ------------------------------------------------------------------------------------------------------------------------ [451] ag  ------------------------------------------------------------------------------------------------------------------------ [520] ce  -------------------------------------------------------------------------------D---------------------------------------- [599] is  ------------------------------------------------------------------------------------------------------------------------ [348] sc  DDENHPLPPLNVAKGR-KLHPSARAKSVGHA-------------RRESLKYMRPPMPSSAYPQQELID--TGFL----------ESSDDNKSDSLGNVTSQTNDSVSVHSVNAHINSPSV [859] sc6 --------------------------------------------RIARFDWR-------------------------------------------------------------------- [470] sp  ------------------------------------------------------------------------------------------------------------------------ [355]                                                                                                                              hs  ------------------------------------------------------------------------------------------------------------------------ [337] mm  ------------------------------------------------------------------------------------------------------------------------ [337] rn  ------------------------------------------------------------------------------------------------------------------------ [337] xt  ------------------------------------------------------------------------------------------------------------------------ [337] dr  ------------------------------------------------------------------------------------------------------------------------ [337] dm  ------------------------------------------------------------VEPLD------------------------------------------------------- [456] ag  --------------------------------------------------------SSSSSSRMH------------------------------------------------------- [529] ce  -----------------------------------------IYPIS--------EHYHPSQQPVDKVVYKLLSD---------------------------------------------- [624] is  ------------------------------------------------------------------------------------------------------------------------ [348] sc  -EKELTDEEILQEASRA------PAGSMPSIDFPRSLFLKGFFSV-----------QTTSSKPLPIVRYKIMFVLRKMNIEFKEVKGGFVCMQRFSSNNVAA-----------------K [944] sc6 -----------------------------------------WYRLS--------DYKTNVGKQIV------------------------------------------------------- [486] sp  -------------------------------------------------------FKRSTGN---------------------------------------------------------- [362]                                                                                                                              hs  ----------------------------------------------LD---------------------------------------------------------PFFN----------- [343] mm  ----------------------------------------------LD---------------------------------------------------------PFFN----------- [343] rn  ----------------------------------------------LD---------------------------------------------------------PFFN----------- [343] xt  ----------------------------------------------TD---------------------------------------------------------PFFN----------- [343] dr  ----------------------------------------------LE---------------------------------------------------------QFFS----------- [343] dm  -----------------------------------------YTRSTLQ---------------------------------------------------------MAQNANGLST----- [473] ag  -----------------------------------------YSFATGD---------------------------------------------------------AFDN----------- [540] ce  ---------------------------------------------ANS---------------------------------LAFPTVMKGTVPKS------------------------- [641] is  ----------------------------------------------TD------------------------------------------------------------------------ [350] sc  REGTPRSIMPLSHH---------ESIRRQGSNKYS----PSSPLTTNSIHQRKTSI---TETYGDDKH----------------SGTSLENIHQQGD--------------GSEGMTTT- [1017] sc6 ---------------------------------------------ENT-------------------------------------------LTRKNQRW------SINEI---------- [502] sp  ---------------------------------------------TND---------------NDDPS-------------WRFRLFVKKLLKNRDQ----------------------- [386]                                                                                                                              hs  ------------------------------------------------------------------------------------------------------------------------ [343] mm  ------------------------------------------------------------------------------------------------------------------------ [343] rn  ------------------------------------------------------------------------------------------------------------------------ [343] xt  ------------------------------------------------------------------------------------------------------------------------ [343] dr  ------------------------------------------------------------------------------------------------------------------------ [343] dm  ----EPEP-------------------------------------------------------------------------------------------------------------DTD [480] ag  ------------------------------------------------------------------------------------------------------------------------ [540] ce  ----YPPP------------------------------------------------------------------------------------------------VFKGLDI------SPS [655] is  ------------------------------------------------------------------------------------------------------------------------ [350] sc  ----EKEP-------------IKFEIH----------------------------------IVKVRIV---------------------GLAGVHFKKISGNTWLYKEL--------ASS [1057] sc6 ----YESP---------------------------------------------------------------------------------------FVKTIADTLSFS------------- [518] sp  ----RSTP-TELLKDFNK--------H--------------------------------------------------------------------------GNFTLPLLE-------NVT [412]                                                                                                                              hs  ------------- [343] mm  ------------- [343] rn  ------------- [343] xt  ------------- [343] dr  ------------- [343] dm  VDMG--------- [484] ag  ------------- [540] ce  ------------- [655] is  ------------- [350] sc  ILKELKL------ [1064] sc6 ------------- [518] sp  I------------ [413]                   Alignment DetailsAlignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References
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