DRSC/TRiP Functional Genomics Resources

Multi Sequence Alignment :

Domains

Index TaxID Gene Name GeneID Protein ID Domain
start 		Domain
stop 		Domain
name 		Domain
description 		external_id
hs 9606 NMU 10874 NP_006672.1 142 166 NMU Neuromedin U; smart00084 CDD:197507
mm 10090 Nmu 56183 NP_062388.1 143 166 NMU Neuromedin U; pfam02070 CDD:460435
rn 10116 Nmu 63887 NP_071575.1 144 166 NMU Neuromedin U; smart00084 CDD:197507
xt 8364 nmu 101731025 XP_031751266.1 154 176 NMU Neuromedin U; smart00084 CDD:197507
dr 7955 nmu 407657 XP_005160570.1 143 166 NMU Neuromedin U; pfam02070 CDD:460435
dm 7227 Lst 36853 NP_001246368.1 - - - - -

Highlight Region

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Alignment

Alignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References

Download raw alignment output file

Download fasta input file



Note:   &mbsp 2019, we've been having trouble with some alignments and are looking into the problem. If the alignment didn't work, please try again. If it still doesn't work, please download the fasta file and align off line. We're looking into it. Thanks.

hs  MLRTESCRPRSPAGQVAA--ASP----------------LLLLLLLLAWCAGACRGAP--ILPQGLQPEQQLQLWNEIDDTCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDN [100]
mm  MSRAAGHRPGLSAGQLAAATASP----------------LLSLLLLLACCADACKGVP--ISPQRLQPEQELQLWNEIHEACASFLSIDSRPQASVALRELCRIVMEISQKPQEQSEKDN [102]
rn  MSRAANRRPGLSAGQLAAATASP----------------LLSLLLLLACCADACRGTP--ISPQRLPPEQELQLWNEIPEACASFLSVDSQPQASVALRKLCRVLMEIFQKPQEQTEKDN [102]
xt  -MLAPNRCNKLPALQYAANIGTPQSCPQLHSFKWQPPSWLLFAILLVSWAA-SCKGFP--LSSNALQ-EQELQLWNELGNDCSTILSDSLGPS---TLEELCFMIMGILQKSQGSDEKEE [112]
dr  -MRNSNQCERATA--HSA--MSPGNTSA-----------LMLAVLLLSFIP-ITTSAPMLLNPSSLEHEQ---LLTQITDLCSFYLSADPSFRTSDVLEDLCFLMLGSLQKSKEITARET [100]
dm  MFAYTWQFPSLHSFLVPSLQLAP----------------LILVILATTMT--TTMAAP--------QQQEVPHALLDIETPNQFNYSPSPLAQPDSLRSKPYFDFLSTLY------AHDT [88]
                :   .:   :*                *:  :*  :       . *          ::      ::        * .          .    .:           :: 

hs  TKRFLFH-YSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRP----------------RNGRRSAGFI----- [174]
mm  TKRFLFH-YSKTQKLGNSNVVSSVVHPLLQLVPQLHERRMKRFKA--EYQSPSVGQSKGYFLFRP----------------RNGKRSTSFI----- [174]
rn  AKRFLFH-YSKTQKLGNSNVVSSVVHPLLQLVPQLHERRMKRYKVN-EYQGP-VAPSGGFFLFRP----------------RNGKRSTSFI----- [174]
xt  SKRFLFH-YSKSHESGNSDITSSVLHPLLQLVPQLHDRRMKRFKAEEEVQGP--GLSRGYFLFRP----------------RNGRRSAIFR----- [184]
dr  SKRFLFH-YTKPNGAGLSDGTSTVLHPLLELIPQLARRRSRRMKLNENLQGPGRIQSRGYFLYRP----------------RNGRRSDEYV----- [174]
dm  AKSNLFRPYSV---------------------------RQRRDADVQKLSRP-----RRAIVFRPLFVYKQQEIRKQEIRDRNAQRRHDLNRLQRV [152]
    :*  **: *:                            * :*     : . *        :::**                **.:*          


Alignment Details

Alignment done with MAFFT FFT-NS-2 (v7.305b) aligner. MAFFT References
  • Strategy: Auto
  • Scoring Matrix: BLOSUM62
  • Gap Penalty: 1.53
  • Offset Value: 0.0