Reagents and Results:
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Cell Screening dsRNAs (2)
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Hits in 1 of 86 screens (Click title to view all hits in that screen)
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Identification of genes required for HOW-dependent RNA degradation
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General dsRNA/Amplicon Information
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| Amplicon ID: |
DRSC06239 |
Sequence: |
ATCTTTTCGCTCATCAGGCTCTTGGCAATGGACATGAACTTCTCTGCACTGGAGGGCGCATTTACAAAGTGAAAACCCTTGGGCCTGTAGGGATACGCTTTGTCGCCCAAAACGGCCAGTTTCTTGACCAGCACCGCGTCGAACTGGAATAGGTGACCTGCCCCAACGCCCTTCATGTCGATGATCTCCACAAAGCCGGATATCATAGCATTGTCGTCTTCCCTTATCTGAATCTCGCCGAGCATCGTGTTTACCTGGACAACCTCGGCAATGGAGTACTTCTTCGAGTCGTATTGACCGTAGCGGGAGATGTGGATGCGAGGACCATCAGCCTGCAGTGGCT |
| "R" Primer: |
AGCCACTGCAGGCTGAT |
| "S" Primer: |
ATCTTTTCGCTCATCAGGC |
| Amplicon Length: |
343 |
| Target Gene(s): |
CG12926 |
| Potential Off-Target Number: |
0 |
| CAR/CAN repeats: |
None |
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dsRNA Matches to Transcripts and Exons
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| Transcript |
FBtr0088502 |
| Exon 2 length |
373 |
dsRNA Position Relative to Exon 2: 21 - 363 |
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Historical Amplicon Information
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| HFA Amplicon ID: |
HFA06239 |
| Amplicon Nickname: (Old Oligo Name) |
CG12926 |
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Click
here for amplicon info documentation
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Genomic Position Information (based on Flybase, release 5.28)
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| Chromosome Length: |
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| Start: |
5494180 |
| End: |
5498522 |
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Hits in 1 of 79 screens (Click title to view all hits in that screen)
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Hedghog secretion (pmid: 22432040 )
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General dsRNA/Amplicon Information
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| Amplicon ID: |
DRSC21930 |
Sequence: |
ATCTTTTCGCTCATCAGGCTCTTGGCAATGGACATGAACTTCTCTGCACTGGAGGGCGCATTTACAAAGTGAAAACCCTTGGGCCTGTAGGGATACGCTTTGTCGCCCAAAACGGCCAGTTTCTTGACCAGCACCGCGTCGAACTGGAATAGGTGACCTGCCCCAACGCCCTTCATGTCGATGATCTCCACAAAGCCGGATATCATAGCATTGTCGTCTTCCCTTATCTGAATCTCGCCGAGCATCGTGTTTACCTGGACAACCTCGGCAATGGAGTACTTCTTCGAGTCGTATTGACCGTAGCGGGAGATGTGGATGCGAGGACCATCAGCCTGCAGTGGCTGCGGCAATCGGAGGAGGCAACTGCAATTTGAATAAATTATGAGGAAACATTCTTTTTACAACCTCAAGTAGATCTCACCCTGTGTCCAGAATGCTGAGCTGCTTCTCACCCACAATGCGATTCTTGTAGAGCTCGGGCACGGCTCCCCTCATCGCATAGAAGTTGTCCAACTTGAG |
| "R" Primer: |
CTCAAGTTGGACAACTTCTATG |
| "S" Primer: |
ATCTTTTCGCTCATCAGGC |
| Amplicon Length: |
519 |
| Target Gene(s): |
CG12926 |
| Potential Off-Target Number: |
1 |
| CAR/CAN repeats: |
None |
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dsRNA Matches to Transcripts and Exons
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| Transcript |
FBtr0088502 |
| Exon 2 length |
373 |
dsRNA Position Relative to Exon 2: -155 - 363 |
| Exon 3 length |
347 |
dsRNA Position Relative to Exon 3: 250 - 768 |
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Genomic Position Information (based on Flybase, release 5.28)
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| Chromosome Length: |
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| Start: |
5494180 |
| End: |
5498698 |
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Transgenic RNAi Project (TRiP) Fly Stocks (0)
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Gene Information for
CG12926:
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| Symbol: |
CG12926 |
Gene Name: |
CG12926 |
| Flybase ID: |
FBgn0033437 |
Entrez Gene: |
35996 |
| Synonyms: |
CG12926 |
| Old Flybase IDs: |
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| NCBI Nucleotide Accs: |
AY075483, BI242204 |
| NCBI Protein Accs: |
AAL68293, AAF58912 |
| UniProt Accs: |
A1Z7X8, Q8SXZ7 |
| Gene Ontology IDs: |
GO:0008431, GO:0005215, GO:0005622, GO:0006810 |
| Protein Domains: |
IPR001071, IPR001251, IPR011074 |
| Unigene ID: |
Dm.5479 |
| RefSeq IDs: |
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| Homologene Group: |
Homologene:119972: Anopheles gambiae str. PEST - AgaP_AGAP004762, Drosophila melanogaster - CG30339 |
| Other External Accs: |
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| Kc167: |
4.06446 - Weakly expressed |
BG3: |
0.447533 - Not expressed |
| Clone 8: |
2.92927 - Weakly expressed |
S2-DRSC: |
2.252 - Weakly expressed |
| S2R+: |
0.30224 - Not expressed |
