Reagents and Results:
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Cell Screening dsRNAs (2)
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General dsRNA/Amplicon Information
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| Amplicon ID: |
DRSC19659 |
Sequence: |
TTACCACTGCGTATCGAGACCATTGTCTTGGGTATGCACTTCTCGTCCTGGCGCGTTCTTCTTCTGGCCAATGTGTCCATTCCTCTGCTGGCTCTGGTGGGGATTAGCGCACTGCCCGAAACGCCCAAATATTTGCTGGTCCAGGGACGTGGCGATGAGTCGCTGGAAGTTTTGCGCTCCATTTTTGCCAATAACTCTGGCCGAGATCCCTCGGAGTATCCGGTTAAGGAAGTGGCTCTGGAAAGCGGTGGCGTCAGCTTGTCCGATGTCCATGGTTTCCTGGACGCAGTGCGCCTCGTTTGGCACCAGACAGTTCCGCTATTCTATCGCGCGCGACTTTGGCACACCCTGAACATCTGTTGCATCCAGTTCATCATCTATTTCCTGGCCCAGGGCATCTTTATGTGGTTCCCAACCATCCTGGATGAGCTGGGCACACGTAATGGCGAAAATACGCTACTCTGCACTGTCCTGCAGGGTTTTAATATTAATTCTAGTTCAGAGGATGAGG |
| "R" Primer: |
TTACCACTGCGTATCGAGA |
| "S" Primer: |
CCTCATCCTCTGAACTAGAAT |
| Amplicon Length: |
511 |
| Target Gene(s): |
CG15221 |
| Potential Off-Target Number: |
0 |
| CAR/CAN repeats: |
None |
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dsRNA Matches to Transcripts and Exons
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| Transcript |
FBtr0112979 |
| Exon 3 length |
657 |
dsRNA Position Relative to Exon 3: 18 - 528 |
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Historical Amplicon Information
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| HFA Amplicon ID: |
HFA19659 |
| Amplicon Nickname: (Old Oligo Name) |
CG15221 |
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Click
here for amplicon info documentation
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Genomic Position Information (based on Flybase, release 5.28)
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| Chromosome Length: |
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| Start: |
11626834 |
| End: |
11631344 |
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General dsRNA/Amplicon Information
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| Amplicon ID: |
DRSC40025 |
Sequence: |
ATCATGATGGTGGGTCGTTTGGGCGCTGTGGTGGGCAGCAATATCCTTGGTCGCCTGCTCTTCGCCAGCTGCGATCCGATCTTCTGGGCCCTATTGGCCCTGGTGGTGTTGCTCTGCACCTTGGGCTACTTCCTGCCGGAGAAGGCACGCAGCCAGCAGAAGAAGCCATCTGCCACAGCAAAGGCCATTGTGACTGCCACCACTAGTCCCATTTTTGCTATTAACTCCAAGTAGGATTAGGCACCGTTAAGAAGAGAGGCTTCATACAGAACATTCATTTAACATCTTATCCATCATACATCATTCTAAATATTTTCGTTTTCTTAAATACTGTATATTTAATGTATAGACTTTCTAAACTACTTTTTTTTTTAATGATTAAATATACATTTAACATTATTATAGTCAAAAGTAGAGTACACGTAAGCTTTATAAAATGTAGCACTTTTGTAAGTTCCACGCTGAAATATTCAGTGTATTTAAAAAAAAAACACATTTAAATATTAGATTAAACTATTTGTAATGCAGAGTTGTGGTGATGG |
| "R" Primer: |
ATCATGATGGTGGGTCGTTT |
| "S" Primer: |
CCATCACCACAACTCTGCAT |
| Amplicon Length: |
542 |
| Target Gene(s): |
CG15221 |
| Potential Off-Target Number: |
0 |
| CAR/CAN repeats: |
None |
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dsRNA Matches to Transcripts and Exons
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| Transcript |
FBtr0112979 |
| Exon 4 length |
1116 |
dsRNA Position Relative to Exon 4: 177 - 718 |
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Genomic Position Information (based on Flybase, release 5.28)
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| Chromosome Length: |
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| Start: |
11627711 |
| End: |
11632252 |
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Transgenic RNAi Project (TRiP) Fly Stocks (1)
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Long Hairpin JF02166
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General Hairpin Information
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| TRiP #: |
JF02166 |
BDSC Stock #: |
31888 |
| Gene ID: |
CG15221 |
Gene Name: |
CG15221 |
| Vector: |
VALIUM10 |
Hairpin ID: |
TR02011P.1 |
| Classifications: |
Transmembrane |
Sense Oligo: |
CACCGAATTCGAGGAGAACCTGTCGGAGAA |
| Antisense Oligo: |
GAACTCACCGCACAAACTGA |
| Insertion Location: |
attP2 |
Gene Information for
CG15221:
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| Symbol: |
CG15221 |
Gene Name: |
CG15221 |
| Flybase ID: |
FBgn0030331 |
Entrez Gene: |
32127 |
| Synonyms: |
CG15221 |
| Old Flybase IDs: |
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| NCBI Nucleotide Accs: |
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| NCBI Protein Accs: |
AAF48086 |
| UniProt Accs: |
Q9VYV0 |
| Gene Ontology IDs: |
GO:0008513, GO:0016021, GO:0055085 |
| Protein Domains: |
IPR011701, IPR020846 |
| Unigene ID: |
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| RefSeq IDs: |
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| Homologene Group: |
Homologene:15712: Anopheles gambiae str. PEST - AgaP_AGAP000785 |
| Other External Accs: |
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| Kc167: |
0.041264 - Not expressed |
BG3: |
0 - Not expressed |
| Clone 8: |
0 - Not expressed |
S2-DRSC: |
32.2193 - Expressed |
| S2R+: |
0 - Not expressed |
