Gene and Amplicon Lookup


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Act42A

Amplicon:  DRSC04835 Hits: 
Screened 52 timesHit
S2R+ Morphology Screen2
MAPK Signaling Pathway Screen3
Identification of genes required for HOW-dependent RNA degradation2
M.fortuitum screen2
RTK Specificity2
Amplicon:  DRSC25061 Hits: 
Screened 3 timesHit
Not yet found in any screens.
Validation Amplicon:  DRSC30744

DRSC04835
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Amplicon ID: DRSC04835 Sequence: GCCTCCATGCCGAGGAACGACGGCTGGAACAGCGATTCGGGGCAACGGAATCGCTCATTTCCGATGGTGATGACCTGTCCATCGGGCAACTCGTACGACTTCTCCAGGGACGAGCTTGAAGCGGCCGTGGCCATCTCCTGCTCGAAGTCCAAGGCCACGTAGCACAGCTTCTCCTTGATGTCGCGCACAATTTCACGCTCGGCGGTGGTGGTGAAGCTGTAACCGCGCTCAGTAAGAATCTTCATCAGGTAGTCGGTTAAATCGCGACCGGCTAGATCCAAACGGAGGATGGCGTGCGGCAGGGCGTAGCCCTCATAAATGGGCACAGTATGGGAGACACCGTCGCCGGAGTCCAACACGATACCTGTGGTACGGCCGGAGGCGTAGAGAGAAAGCACCGCCTGGATGGCAACATACATGGCCGGAGTGTTGAAGGTTTCAAACATAATCTGAGTCATCTTCTCGCGATTAGCCTTGGGGTTCAAAGGAGCCTCAGTAAG
"R" Primer: CTTACTGAGGCTCCTTTGAA
"S" Primer: GCCTCCATGCCGAGGAA
Amplicon Length: 500
Target Gene(s): Act42A
Potential Off-Target Number: 5 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: 5 (Click for details)

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome 2R
Chromosome Length: 21146708
Start: 1902091
End: 1902590

Detailed Gene Information
Gene Act42A
Symbol: Act42A
Flybase ID: FBgn0000043
Gene Name: Actin 42A
Synonyms: AFFX-Dros-ACTIN_M_r_at, CG12051, actin42A, 42A actin, A, act42A, act 42A, C, Actin, Actin/BAP47, Act, F-actin, BAP47
Old Flybase IDs:
Genomic Sequence Analysis: FBan0012051
NCBI Nucleotide Accs: Z71042, X54848, X05176, K00670, CZ475000, BZ748945, AZ300929, AY118907, AI946431, AI946373, AI945922, AE003784, AA803424, AA540333, AA539765
NCBI Protein Accs: CAA38618, CAA28809, AAA28314, AAM50767, AAF57294
Swiss-Prot Accs: P02572
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0006911, GO:0000910, GO:0005200, GO:0005884, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 35526
Unigene ID: Dm.7040
RefSeq IDs: NM_078901.2
Homologene Group: Homologene:101521: Homo sapiens - ACTG2, Pan troglodytes - ACTG2, Canis lupus familiaris - ACTG2, Bos taurus - ACTG2, Mus musculus - Acta2, Rattus norvegicus - Actg2, Gallus gallus - ACTG2, Danio rerio - acta1a, Caenorhabditis elegans - act-3, Caenorhabditis elegans - act-1, Caenorhabditis elegans - act-2, Caenorhabditis elegans - act-4, Arabidopsis thaliana - ACT8, Arabidopsis thaliana - ACT2, Oryza sativa Japonica Group - Os03g0718100
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0086029
Exon 2 Length: 1513 bp
Amplicon Position Relative to Exon 2: 338 - 837
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID: HFA04835
Amplicon Nickname:
(Old Oligo Name)		 Act42A
Click here for amplicon info documentation

DRSC25061
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Amplicon ID: DRSC25061 Sequence: TATGGTTTGCTTATGCGTCGTGTACAACTGTGTATAAAAGTGAATGGAATGCATTCTTCTGAAGGAGCGGAAGTGTTGTGCGCCTGCTCCCGGTATTAATGTACTCATGCCCAATACTTTTGACTCCCATCCTTTGTCTGCAATGGGTGTGT
"R" Primer: ACACACCCATTGCAGACAAA
"S" Primer: TATGGTTTGCTTATGCGTCG
Amplicon Length: 152
Target Gene(s): Act42A
Potential Off-Target Number: 0 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: 0 (Click for details)

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome 2R
Chromosome Length: 21146708
Start: 1901587
End: 1901738

Detailed Gene Information
Gene Act42A
Symbol: Act42A
Flybase ID: FBgn0000043
Gene Name: Actin 42A
Synonyms: AFFX-Dros-ACTIN_M_r_at, CG12051, actin42A, 42A actin, A, act42A, act 42A, C, Actin, Actin/BAP47, Act, F-actin, BAP47
Old Flybase IDs:
Genomic Sequence Analysis: FBan0012051
NCBI Nucleotide Accs: Z71042, X54848, X05176, K00670, CZ475000, BZ748945, AZ300929, AY118907, AI946431, AI946373, AI945922, AE003784, AA803424, AA540333, AA539765
NCBI Protein Accs: CAA38618, CAA28809, AAA28314, AAM50767, AAF57294
Swiss-Prot Accs: P02572
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0006911, GO:0000910, GO:0005200, GO:0005884, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 35526
Unigene ID: Dm.7040
RefSeq IDs: NM_078901.2
Homologene Group: Homologene:101521: Homo sapiens - ACTG2, Pan troglodytes - ACTG2, Canis lupus familiaris - ACTG2, Bos taurus - ACTG2, Mus musculus - Acta2, Rattus norvegicus - Actg2, Gallus gallus - ACTG2, Danio rerio - acta1a, Caenorhabditis elegans - act-3, Caenorhabditis elegans - act-1, Caenorhabditis elegans - act-2, Caenorhabditis elegans - act-4, Arabidopsis thaliana - ACT8, Arabidopsis thaliana - ACT2, Oryza sativa Japonica Group - Os03g0718100
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0086029
Exon 2 Length: 1513 bp
Amplicon Position Relative to Exon 2: 1190 - 1341
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID:
Amplicon Nickname:
(Old Oligo Name)		 Act42A
Click here for amplicon info documentation

DRSC30744
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Validation Amplicon ID: DRSC30744 Sequence: AATCTTCATGGTGGACGGAGCCAACGCCGTGATTTCCTTTTGCATGCGGTCAGCGATTCCCGGGTACATGGTGGTGCCGCCGGACAGCACAGTGTTGGCGTACAGATCCTTACGGATGTCGACGTCACACTTCATGATTGAGTTGTAGGTGGTCTCGTGAATGCCAC
"R" Primer: GTGGCATTCACGAGACCAC
"S" Primer: AATCTTCATGGTGGACGGAG
Amplicon Length: 167
Target Gene(s): Act42A
Potential Off-Target Number: 2 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: NA

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome 2R
Chromosome Length: 21146708
Start: 1901922
End: 1902088

Detailed Gene Information
Gene Act42A
Symbol: Act42A
Flybase ID: FBgn0000043
Gene Name: Actin 42A
Synonyms: AFFX-Dros-ACTIN_M_r_at, CG12051, actin42A, 42A actin, A, act42A, act 42A, C, Actin, Actin/BAP47, Act, F-actin, BAP47
Old Flybase IDs:
Genomic Sequence Analysis: FBan0012051
NCBI Nucleotide Accs: Z71042, X54848, X05176, K00670, CZ475000, BZ748945, AZ300929, AY118907, AI946431, AI946373, AI945922, AE003784, AA803424, AA540333, AA539765
NCBI Protein Accs: CAA38618, CAA28809, AAA28314, AAM50767, AAF57294
Swiss-Prot Accs: P02572
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0006911, GO:0000910, GO:0005200, GO:0005884, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 35526
Unigene ID: Dm.7040
RefSeq IDs: NM_078901.2
Homologene Group: Homologene:101521: Homo sapiens - ACTG2, Pan troglodytes - ACTG2, Canis lupus familiaris - ACTG2, Bos taurus - ACTG2, Mus musculus - Acta2, Rattus norvegicus - Actg2, Gallus gallus - ACTG2, Danio rerio - acta1a, Caenorhabditis elegans - act-3, Caenorhabditis elegans - act-1, Caenorhabditis elegans - act-2, Caenorhabditis elegans - act-4, Arabidopsis thaliana - ACT8, Arabidopsis thaliana - ACT2, Oryza sativa Japonica Group - Os03g0718100
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0086029
Exon 2 Length: 1513 bp
Amplicon Position Relative to Exon 2: 840 - 1006
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID:
Amplicon Nickname:
(Old Oligo Name)		 Act42A
Click here for amplicon info documentation

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