Gene and Amplicon Lookup


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Act5C

Amplicon:  DRSC17723 Hits: 
Screened 52 timesHit
Kc Cell Morphology2
S2R+ Morphology Screen2
Screen for genes affecting Listeria monocytogenes infection in Drosophila SL2 cell line.2
MAPK Signaling Pathway Screen2
Host factors important for uptake, survival and multiplication of chlamydia caviae1
Kc cytokinesis3
Phagocytosis of Apoptotic Cells2
Genes regulating lipid storage in Drosophila melanogaster2
M.fortuitum screen2
Amplicon:  DRSC25024 Hits: 
Screened 3 timesHit
Not yet found in any screens.
Validation Amplicon:  DRSC31415
Validation Amplicon:  DRSC31416

DRSC17723
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Amplicon ID: DRSC17723 Sequence: GAGGCCCCGCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACACCCGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGCCTCCGGTCGTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCCACACCGTGCCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCGGTTACTCTTTCACCACCACCGCTGAGCGTGAAATCGTCCGTGACATCAAGGAGAAGCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATGGCCACCGCTGCCAGCAGCTCCTCGTTGGAGAAGTCCTACGAGCTGCCCGACGGACAGGTGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGCCCTGTTCCAGCCCTCGTTCTTGGGAATGGAGGCTTGCGG
"R" Primer: GAGGCCCCGCTGAACC
"S" Primer: CCGCAAGCCTCCATTCC
Amplicon Length: 500
Target Gene(s): Act5C
Potential Off-Target Number: 5 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: 9 (Click for details)

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome X
Chromosome Length: 22422827
Start: 5797052
End: 5797551

Detailed Gene Information
Gene Act5C
Symbol: Act5C
Flybase ID: FBgn0000042
Gene Name: Actin 5C
Synonyms: l(1)G0177, T11, actin-5C, actin, BAP47, beta-actin, A, l(1)G0009, act, l(1)G0010, actin 5C, Actin/BAP47, F-actin, G-actin, Act-5C, Act5c, l(1)G0025, actin A1, l(1)G0420, anon-fast-evolving-2D2, beta-actin/Bap47, l(1)G0079, M32055, anon-EST:fe2D2, Actin5C, cyt5C, act 5C, 5C actin, Ac5C, l(1)G0486, CG4027, l(1)G0117, cellular cytoskeletal beta-actin, l(1)G0245, l(1)G0330
Old Flybase IDs: FBgn0025223, FBgn0026673, FBgn0026683, FBgn0026712, FBgn0027215, FBgn0027255, FBgn0027284, FBgn0027327, FBgn0028278, FBgn0040144, FBgn0040204
Genomic Sequence Analysis: FBan0004027
NCBI Nucleotide Accs: X15730, X07627, X06384, X06383, X06382, M32055, M20378, M20377, M13587, M13586, M13480, K01489, K00667, CZ477830, CZ472939, CZ471464, CL868538, BI163508, BH614929, AY089562, AQ254778, AQ074128, AQ073218, AQ073217, AQ073196, AQ025532, AJ426705, AJ426704, AJ426703, AJ426702, AJ426701, AJ426699, AJ426698, AJ426697, AI944685, AJ426695, AA433252, AE003435, AA202624
NCBI Protein Accs: CAA30474, CAB61444, CAA29681, AAA28315, AAA28316, AAL90300, AAN09154, AAF46098
Swiss-Prot Accs: P10987
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0016319, GO:0002121, GO:0032507, GO:0006911, GO:0031011, GO:0005811, GO:0000910, GO:0007291, GO:0005884, GO:0005200, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 31521
Unigene ID: Dm.2951
RefSeq IDs: NM_001014725.1, NM_001014726.1, NM_078497.2, NM_167053.1
Homologene Group: Homologene:74402: Homo sapiens - ACTG1, Canis lupus familiaris - ACTG1, Bos taurus - ACTG1, Mus musculus - Actg1, Rattus norvegicus - Actg1, Gallus gallus - RCJMB04_1h13, Danio rerio - bactin1, Danio rerio - bactin2, Anopheles gambiae str. PEST - AgaP_AGAP000651, Caenorhabditis elegans - act-5, Schizosaccharomyces pombe - act1, Saccharomyces cerevisiae - ACT1, Kluyveromyces lactis NRRL Y-1140 - KLLA0D05357g, Ashbya gossypii ATCC 10895 - AGOS_ABR222W, Magnaporthe grisea 70-15 - MGG_03982, - , Arabidopsis thaliana - ACT11, Oryza sativa Japonica Group - Os05g0106600, Plasmodium falciparum 3D7 - ACT1
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0100663
Exon 8 Length: 1778 bp
Amplicon Position Relative to Exon 8: 330 - 829
Transcript FBtr0070823
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 330 - 829
Transcript FBtr0070822
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 330 - 829
Transcript FBtr0100662
Exon 6 Length: 2101 bp
Amplicon Position Relative to Exon 6: 330 - 829
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID: HFA17723
Amplicon Nickname:
(Old Oligo Name)		 Act5C
Click here for amplicon info documentation

DRSC25024
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Amplicon ID: DRSC25024 Sequence: TGTGACGAAGAAGTTGCTGCTCTGGTTGTCGACAACGGCTCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGTCTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTGGGTGATGA
"R" Primer: TGTGACGAAGAAGTTGCTGC
"S" Primer: TCATCACCCACGTACGAGTC
Amplicon Length: 170
Target Gene(s): Act5C
Potential Off-Target Number: 3 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: 0 (Click for details)

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome X
Chromosome Length: 22422827
Start: 5796734
End: 5796903

Detailed Gene Information
Gene Act5C
Symbol: Act5C
Flybase ID: FBgn0000042
Gene Name: Actin 5C
Synonyms: l(1)G0177, T11, actin-5C, actin, BAP47, beta-actin, A, l(1)G0009, act, l(1)G0010, actin 5C, Actin/BAP47, F-actin, G-actin, Act-5C, Act5c, l(1)G0025, actin A1, l(1)G0420, anon-fast-evolving-2D2, beta-actin/Bap47, l(1)G0079, M32055, anon-EST:fe2D2, Actin5C, cyt5C, act 5C, 5C actin, Ac5C, l(1)G0486, CG4027, l(1)G0117, cellular cytoskeletal beta-actin, l(1)G0245, l(1)G0330
Old Flybase IDs: FBgn0025223, FBgn0026673, FBgn0026683, FBgn0026712, FBgn0027215, FBgn0027255, FBgn0027284, FBgn0027327, FBgn0028278, FBgn0040144, FBgn0040204
Genomic Sequence Analysis: FBan0004027
NCBI Nucleotide Accs: X15730, X07627, X06384, X06383, X06382, M32055, M20378, M20377, M13587, M13586, M13480, K01489, K00667, CZ477830, CZ472939, CZ471464, CL868538, BI163508, BH614929, AY089562, AQ254778, AQ074128, AQ073218, AQ073217, AQ073196, AQ025532, AJ426705, AJ426704, AJ426703, AJ426702, AJ426701, AJ426699, AJ426698, AJ426697, AI944685, AJ426695, AA433252, AE003435, AA202624
NCBI Protein Accs: CAA30474, CAB61444, CAA29681, AAA28315, AAA28316, AAL90300, AAN09154, AAF46098
Swiss-Prot Accs: P10987
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0016319, GO:0002121, GO:0032507, GO:0006911, GO:0031011, GO:0005811, GO:0000910, GO:0007291, GO:0005884, GO:0005200, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 31521
Unigene ID: Dm.2951
RefSeq IDs: NM_001014725.1, NM_001014726.1, NM_078497.2, NM_167053.1
Homologene Group: Homologene:74402: Homo sapiens - ACTG1, Canis lupus familiaris - ACTG1, Bos taurus - ACTG1, Mus musculus - Actg1, Rattus norvegicus - Actg1, Gallus gallus - RCJMB04_1h13, Danio rerio - bactin1, Danio rerio - bactin2, Anopheles gambiae str. PEST - AgaP_AGAP000651, Caenorhabditis elegans - act-5, Schizosaccharomyces pombe - act1, Saccharomyces cerevisiae - ACT1, Kluyveromyces lactis NRRL Y-1140 - KLLA0D05357g, Ashbya gossypii ATCC 10895 - AGOS_ABR222W, Magnaporthe grisea 70-15 - MGG_03982, - , Arabidopsis thaliana - ACT11, Oryza sativa Japonica Group - Os05g0106600, Plasmodium falciparum 3D7 - ACT1
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0100663
Exon 8 Length: 1778 bp
Amplicon Position Relative to Exon 8: 12 - 181
Transcript FBtr0070823
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 12 - 181
Transcript FBtr0070822
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 12 - 181
Transcript FBtr0100662
Exon 6 Length: 2101 bp
Amplicon Position Relative to Exon 6: 12 - 181
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID:
Amplicon Nickname:
(Old Oligo Name)		 Act5C
Click here for amplicon info documentation

DRSC31415
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Validation Amplicon ID: DRSC31415 Sequence: TGTGACGAAGAAGTTGCTGCTCTGGTTGTCGACAACGGCTCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGTCTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTGGGTGATGA
"R" Primer: TGTGACGAAGAAGTTGCTGC
"S" Primer: TCATCACCCACGTACGAGTC
Amplicon Length: 170
Target Gene(s): Act5C
Potential Off-Target Number: 3 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: NA

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome X
Chromosome Length: 22422827
Start: 5796734
End: 5796903

Detailed Gene Information
Gene Act5C
Symbol: Act5C
Flybase ID: FBgn0000042
Gene Name: Actin 5C
Synonyms: l(1)G0177, T11, actin-5C, actin, BAP47, beta-actin, A, l(1)G0009, act, l(1)G0010, actin 5C, Actin/BAP47, F-actin, G-actin, Act-5C, Act5c, l(1)G0025, actin A1, l(1)G0420, anon-fast-evolving-2D2, beta-actin/Bap47, l(1)G0079, M32055, anon-EST:fe2D2, Actin5C, cyt5C, act 5C, 5C actin, Ac5C, l(1)G0486, CG4027, l(1)G0117, cellular cytoskeletal beta-actin, l(1)G0245, l(1)G0330
Old Flybase IDs: FBgn0025223, FBgn0026673, FBgn0026683, FBgn0026712, FBgn0027215, FBgn0027255, FBgn0027284, FBgn0027327, FBgn0028278, FBgn0040144, FBgn0040204
Genomic Sequence Analysis: FBan0004027
NCBI Nucleotide Accs: X15730, X07627, X06384, X06383, X06382, M32055, M20378, M20377, M13587, M13586, M13480, K01489, K00667, CZ477830, CZ472939, CZ471464, CL868538, BI163508, BH614929, AY089562, AQ254778, AQ074128, AQ073218, AQ073217, AQ073196, AQ025532, AJ426705, AJ426704, AJ426703, AJ426702, AJ426701, AJ426699, AJ426698, AJ426697, AI944685, AJ426695, AA433252, AE003435, AA202624
NCBI Protein Accs: CAA30474, CAB61444, CAA29681, AAA28315, AAA28316, AAL90300, AAN09154, AAF46098
Swiss-Prot Accs: P10987
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0016319, GO:0002121, GO:0032507, GO:0006911, GO:0031011, GO:0005811, GO:0000910, GO:0007291, GO:0005884, GO:0005200, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 31521
Unigene ID: Dm.2951
RefSeq IDs: NM_001014725.1, NM_001014726.1, NM_078497.2, NM_167053.1
Homologene Group: Homologene:74402: Homo sapiens - ACTG1, Canis lupus familiaris - ACTG1, Bos taurus - ACTG1, Mus musculus - Actg1, Rattus norvegicus - Actg1, Gallus gallus - RCJMB04_1h13, Danio rerio - bactin1, Danio rerio - bactin2, Anopheles gambiae str. PEST - AgaP_AGAP000651, Caenorhabditis elegans - act-5, Schizosaccharomyces pombe - act1, Saccharomyces cerevisiae - ACT1, Kluyveromyces lactis NRRL Y-1140 - KLLA0D05357g, Ashbya gossypii ATCC 10895 - AGOS_ABR222W, Magnaporthe grisea 70-15 - MGG_03982, - , Arabidopsis thaliana - ACT11, Oryza sativa Japonica Group - Os05g0106600, Plasmodium falciparum 3D7 - ACT1
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0100663
Exon 8 Length: 1778 bp
Amplicon Position Relative to Exon 8: 12 - 181
Transcript FBtr0070823
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 12 - 181
Transcript FBtr0070822
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 12 - 181
Transcript FBtr0100662
Exon 6 Length: 2101 bp
Amplicon Position Relative to Exon 6: 12 - 181
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID:
Amplicon Nickname:
(Old Oligo Name)		 Act5C
Click here for amplicon info documentation

DRSC31416
Click for Section 1: General Amplicon Information
Click for Section 2: Amplicon Genomic Position Information
Click for Section 3: Detailed Gene Information
Click for Section 4: Historical Amplicon Information

General Amplicon Information
Validation Amplicon ID: DRSC31416 Sequence: CTTGATTCTGCTGGAGGAGGAGGAGGAGAAGTCGAGGAAGCAGCAGCGAAAGTGCAAGTGCGAGTGGTGGAAGTTTGGAGTGCAGCACAACAAAATCAACAACAACACCAACTACAAGATGAAAAGAGCGGAACCA
"R" Primer: CTTGATTCTGCTGGAGGAGG
"S" Primer: TGGTTCCGCTCTTTTCATCT
Amplicon Length: 136
Target Gene(s): Act5C
Potential Off-Target Number: 14 (Click for details)
CAR/CAN repeats: None
Number of Public Screens with Hits to this Amplicon: NA

Genomic Position Information

 (based on Flybase, release 5.13)
Position On Chromosome X
Chromosome Length: 22422827
Start: 5797905
End: 5798040

Detailed Gene Information
Gene Act5C
Symbol: Act5C
Flybase ID: FBgn0000042
Gene Name: Actin 5C
Synonyms: l(1)G0177, T11, actin-5C, actin, BAP47, beta-actin, A, l(1)G0009, act, l(1)G0010, actin 5C, Actin/BAP47, F-actin, G-actin, Act-5C, Act5c, l(1)G0025, actin A1, l(1)G0420, anon-fast-evolving-2D2, beta-actin/Bap47, l(1)G0079, M32055, anon-EST:fe2D2, Actin5C, cyt5C, act 5C, 5C actin, Ac5C, l(1)G0486, CG4027, l(1)G0117, cellular cytoskeletal beta-actin, l(1)G0245, l(1)G0330
Old Flybase IDs: FBgn0025223, FBgn0026673, FBgn0026683, FBgn0026712, FBgn0027215, FBgn0027255, FBgn0027284, FBgn0027327, FBgn0028278, FBgn0040144, FBgn0040204
Genomic Sequence Analysis: FBan0004027
NCBI Nucleotide Accs: X15730, X07627, X06384, X06383, X06382, M32055, M20378, M20377, M13587, M13586, M13480, K01489, K00667, CZ477830, CZ472939, CZ471464, CL868538, BI163508, BH614929, AY089562, AQ254778, AQ074128, AQ073218, AQ073217, AQ073196, AQ025532, AJ426705, AJ426704, AJ426703, AJ426702, AJ426701, AJ426699, AJ426698, AJ426697, AI944685, AJ426695, AA433252, AE003435, AA202624
NCBI Protein Accs: CAA30474, CAB61444, CAA29681, AAA28315, AAA28316, AAL90300, AAN09154, AAF46098
Swiss-Prot Accs: P10987
Gene Ontology IDs: GO:0005515, GO:0005524, GO:0016319, GO:0002121, GO:0032507, GO:0006911, GO:0031011, GO:0005811, GO:0000910, GO:0007291, GO:0005884, GO:0005200, GO:0007010
Protein Domains: IPR004001, IPR020902, IPR004000
Entrez Gene: 31521
Unigene ID: Dm.2951
RefSeq IDs: NM_001014725.1, NM_001014726.1, NM_078497.2, NM_167053.1
Homologene Group: Homologene:74402: Homo sapiens - ACTG1, Canis lupus familiaris - ACTG1, Bos taurus - ACTG1, Mus musculus - Actg1, Rattus norvegicus - Actg1, Gallus gallus - RCJMB04_1h13, Danio rerio - bactin1, Danio rerio - bactin2, Anopheles gambiae str. PEST - AgaP_AGAP000651, Caenorhabditis elegans - act-5, Schizosaccharomyces pombe - act1, Saccharomyces cerevisiae - ACT1, Kluyveromyces lactis NRRL Y-1140 - KLLA0D05357g, Ashbya gossypii ATCC 10895 - AGOS_ABR222W, Magnaporthe grisea 70-15 - MGG_03982, - , Arabidopsis thaliana - ACT11, Oryza sativa Japonica Group - Os05g0106600, Plasmodium falciparum 3D7 - ACT1
Other External Accs:
Amplicon Matches To Transcripts And Exons:
Transcript FBtr0100663
Exon 8 Length: 1778 bp
Amplicon Position Relative to Exon 8: 1183 - 1318
Transcript FBtr0070823
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 1183 - 1318
Transcript FBtr0070822
Exon 2 Length: 1488 bp
Amplicon Position Relative to Exon 2: 1183 - 1318
Transcript FBtr0100662
Exon 6 Length: 2101 bp
Amplicon Position Relative to Exon 6: 1183 - 1318
Click here for details of blast results.

Historical Amplicon Information
HFA Amplicon ID:
Amplicon Nickname:
(Old Oligo Name)		 Act5C
Click here for amplicon info documentation

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