DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCO2 and Tymp

DIOPT Version :10

Sequence 1:NP_005129.2 Gene:SCO2 / 9997 HGNCID:10604 Length:266 Species:Homo sapiens
Sequence 2:XP_008763952.1 Gene:Tymp / 315219 RGDID:1305756 Length:760 Species:Rattus norvegicus


Alignment Length:265 Identity:207/265 - (78%)
Similarity:226/265 - (85%) Gaps:8/265 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     1 MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITG 65
            |:||...|.||.:|||.||  |.....|:.||:.|...|.|      ||||.||||||||||||.
  Rat   503 MMLLALGPKAWPKLSQFKP--LLRISRGETLHINSRHWSGQ------GQGQHQGPGLRTRLLITA 559

Human    66 LFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVLMYFGF 130
            |||||||.||||.|||||:.:||:|||||||||||||||.||||:|:.|||||||||||||||||
  Rat   560 LFGAGLGWAWLAARAEKEQWRQQQRTEALRQAAVGQGDFSLLDHKGQPRCKADFRGQWVLMYFGF 624

Human   131 THCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGST 195
            ||||||||||||||||||::|||||.||.|||||:|||||||||.|||||||:||||||||||||
  Rat   625 THCPDICPDELEKLVQVVQKLEAEPELPLVQPVFVTVDPERDDVAAMARYVQEFHPRLLGLTGST 689

Human   196 KQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 260
            :|||.||.:|||||:||||||||||||||||||||||||||||||||||||||||.:|||||:||
  Rat   690 EQVAHASRNYRVYYSAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQIVESVRRHIAA 754

Human   261 FRSVL 265
            |.|:|
  Rat   755 FHSIL 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCO2NP_005129.2 SCO 101..242 CDD:239266 124/140 (89%)
TympXP_008763952.1 DeoA 31..>383 CDD:439983
SCO 595..736 CDD:239266 124/140 (89%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.