DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPDL and trv

DIOPT Version :10

Sequence 1:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens
Sequence 2:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster


Alignment Length:475 Identity:109/475 - (22%)
Similarity:163/475 - (34%) Gaps:154/475 - (32%)


- Green bases have known domain annotations that are detailed below.


Human     4 PPRLSHV-----PPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSS-ARQGARRAQRHVT 62
            ||.|:|.     ||||.||.             ..||:.....|||..|:: ...|..|.     
  Fly   184 PPMLTHFQAMMQPPPLPPSP-------------MMPPQSFGCPLPSRTPATPPLPGTYRV----- 230

Human    63 AQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQ-----HPPADSSVTM-- 120
              |..:.|..||:...:|           :..:.|:..|..|...|.:     .|||..|:.:  
  Fly   231 --QSLKSAAAAAVSAYQR-----------NGKLPRNLPALRAMEMALRTNSFATPPAPHSLPLPP 282

Human   121 ----------EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVV 175
                      :||      |:..|..:.....::|  ..:|:|.||.:...:.|.|..:.|||:.
  Fly   283 PHAARTEGGGQDM------EDSDEEMEYMPPLHKQ--FHIFVGDLSSEIETQQLREAFTPFGEIS 339

Human   176 DCTIKTDPVTGRSRGFGFVLF-KDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKK----- 234
            ||.:..||.|.:|:|:|||.| |.:.:...:..:....|..:.|   |......|.|..|     
  Fly   340 DCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSI---RTNWATRKPPASKENIKP 401

Human   235 ----------------VFVGGLS---PDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 280
                            |:|||::   ...|||.:::.|..:|.|:.|.:..|      :|:.|:.
  Fly   402 LTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKD------KGYAFVR 460

Human   281 YTDEEPVKKLLESRYHQIGSGKCEIKVAQP------KEVYRQQQQQ---QKGGRGAAAGGRGGTR 336
            ::.:|.....:      :|....||. |||      ||.......|   .:....|||...|...
  Fly   461 FSTKEAATHAI------VGVHNTEIN-AQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPY 518

Human   337 GRGRGQGQNWNQGFNNYYDQGYGNYNSAYG---------------------------GDQNYSGY 374
            |.|.....           ..||...:|.|                           ..||....
  Fly   519 GVGAAAAA-----------AAYGQQLAATGCWYSPTPTYPASSATAAAVTPAAASAAAVQNQFLQ 572

Human   375 GGYDYTGYNYGNY-GYGQGY 393
            |   ..||::|.| ||.|||
  Fly   573 G---IQGYHFGQYGGYQQGY 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 23/84 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120 8/28 (29%)
RRM1_hnRPDL 149..224 CDD:410152 24/75 (32%)
RRM2_hnRPDL 234..308 CDD:409998 19/97 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348 7/37 (19%)
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420 16/80 (20%)
Necessary for its nuclear import and export 396..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 24/76 (32%)
RRM3_TIA1_like 416..489 CDD:409790 21/85 (25%)
Blue background indicates that the domain is not in the aligned region.

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