DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPDL and tra2

DIOPT Version :10

Sequence 1:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens
Sequence 2:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster


Alignment Length:358 Identity:70/358 - (19%)
Similarity:113/358 - (31%) Gaps:155/358 - (43%)


- Green bases have known domain annotations that are detailed below.


Human    48 SSARQGARRAQRHVTAQQPSRLAGGAAIKGGRRRRPDL----FRRHFKSSSIQRSAAAAAATRTA 108
            ||.|.......:|  .:..|..:.|....|.:.||.|.    .|||.:|||.:||     .:|::
  Fly     7 SSGRLHCSARYKH--KRSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRRRS-----RSRSS 64

Human   109 RQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGE 173
            .:.||.:                    .:..:.::.:|..:|.                      
  Fly    65 SESPPPE--------------------PRHRSGRSSRDRERMH---------------------- 87

Human   174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 238
                         :||                    ||        |:.::.         :.|.
  Fly    88 -------------KSR--------------------EH--------PQASRC---------IGVF 102

Human   239 GLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKC 303
            ||:.:||:.:::|.|..:|.||.|::.:|.:|...||||||.:      :||.::|..:......
  Fly   103 GLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYF------EKLSDARAAKDSCSGI 161

Human   304 EI---------KVAQPKE-----VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYY 354
            |:         .:.|...     ||..:|.     ||.|.......|||            ..|:
  Fly   162 EVDGRRIRVDFSITQRAHTPTPGVYLGRQP-----RGKAPRSFSPRRGR------------RVYH 209

Human   355 DQG---YGNYNSAYGGDQNYSGYGGYDYTGYNY 384
            |:.   |.||...            |||....|
  Fly   210 DRSASPYDNYRDR------------YDYRNDRY 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 8/34 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120 5/23 (22%)
RRM1_hnRPDL 149..224 CDD:410152 6/74 (8%)
RRM2_hnRPDL 234..308 CDD:409998 23/82 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348 9/34 (26%)
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420 9/46 (20%)
Necessary for its nuclear import and export 396..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 23/93 (25%)
Blue background indicates that the domain is not in the aligned region.

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