DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HNRNPDL and Caper

DIOPT Version :10

Sequence 1:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:271 Identity:72/271 - (26%)
Similarity:112/271 - (41%) Gaps:49/271 - (18%)


- Green bases have known domain annotations that are detailed below.


Human    53 GARRAQRHVTAQQPSRLAGGAAIKGGR----RRR------------PDLFRRHFKSSSIQRSAAA 101
            |.|...|....:...|..|..:::..|    |||            |...|:...|.|..|::..
  Fly   142 GGRYGDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRR 206

Human   102 AAATRTARQHPP--ADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDL 164
            .......|:.||  ||.:...|                  .|..::|...:|...||.....:||
  Fly   207 RGTNSPRRRSPPNGADRTTPTE------------------LSPEERDARTVFCIQLSQRVRARDL 253

Human   165 TEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229
            .|:.|..|:|.|..:.|...|.|.:|..::.|.|..||...|.|...:|.|..|..:..:|.|.:
  Fly   254 EEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNR 318

Human   230 --------EP-----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
                    :|     |.:::||.|..:.:|:.::..|..||:|:.|:|.|||:|...:|:.||||
  Fly   319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITY 383

Human   282 TDEEPVKKLLE 292
            .:.:..||.||
  Fly   384 HNADDAKKALE 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 9/45 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120 6/25 (24%)
RRM1_hnRPDL 149..224 CDD:410152 23/74 (31%)
RRM2_hnRPDL 234..308 CDD:409998 23/59 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420
Necessary for its nuclear import and export 396..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 58/200 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.