DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MED12 and dpy-22

DIOPT Version :10

Sequence 1:NP_005111.2 Gene:MED12 / 9968 HGNCID:11957 Length:2177 Species:Homo sapiens
Sequence 2:NP_509645.1 Gene:dpy-22 / 181194 WormBaseID:WBGene00001081 Length:3498 Species:Caenorhabditis elegans


Alignment Length:3087 Identity:575/3087 - (18%)
Similarity:952/3087 - (30%) Gaps:1212/3087 - (39%)


- Green bases have known domain annotations that are detailed below.


Human    18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFN--------PAKISSNFS 74
            |:|..|||.|:..|:||.||...:|:|: ..|....:......|.|.|        ..:..|..:
 Worm     8 RMGTADVYKQNKNQEEDMLTTERLKKGY-QMPLTQYELQSLVFNASENKLIRLEKAQKRSQSMIA 71

Human    75 SIIAEKLRCNTLPDTGRRKPQVNQKDNF----WLVTARSQSAINTWFTDLAGTKPLTQLAKKVPI 135
            |:|.:|...:...|..|:.|: .|...|    |   .|..|....:|:.||...||.||::::|.
 Worm    72 SVIHKKGEFHMNYDRERKIPK-EQLPCFAPHNW---KRILSDRVKFFSALARGTPLQQLSQRIPG 132

Human   136 FSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAISETKVKKRHVD-PFMEWTQIITK---YLWE 196
            |.:||.:|...:.|.:...||.|.:|:.|......|....||..:| ..:|.:|...|   :|..
 Worm   133 FRRKELLFLEFSDYNISYDRAIWCVKLLCILGFNSSSKTQKKTLLDVATLELSQACNKTTIWLVT 197

Human   197 QLQKMAEYYRPGPAGSGGCGSTIGPLPHDVEVAIRQWDYTEKLAMFMFQDGMLDRHEFLTWVLEC 261
            ||.|                |...|:..  ..|.:.|:|......:||.||:||:.|||..:.|.
 Worm   198 QLYK----------------SFRNPIKR--REATKTWNYLTGFMKYMFDDGVLDKQEFLNDLTEV 244

Human   262 FEKIRPGEDELLKLLLPLLLRYSGEFVQ----SAYLSRRL----------------------AYF 300
            |.::...::.....:|...::|...||:    |..|:||.                      ||:
 Worm   245 FNQLFLQKNFKNPSVLSTFMKYYVYFVEDLSSSLVLARRSSTLLCQALGFLFEMAQDKRKIDAYY 309

Human   301 CT--------------------------------------------------------------- 302
            .:                                                               
 Worm   310 DSANKTFIKKEFENEDGEIYEFEDYDDFIDMLDEIPDVPYFDETDKTPEAQAEELIKQHEKRKAG 374

Human   303 --------RRLAL---------------------------------------------------- 307
                    ||..|                                                    
 Worm   375 SLKKSERRRRRGLSKNRPKKMPQNPSNEASLDHDKVQIKQEPMDYDEYGGQQSDNSMDYDSFSHQ 439

Human   308 ----------------------------------------------------------------- 307
                                                                             
 Worm   440 YDPSYEPLPFKPLHTDIPKKLTDDEEFKYMKIGKRSVTPERISGRYGSMTYPFWIQQGGVGIDPP 504

Human   308 --------------------QLDGVSSHS-SHVIS------------------------------ 321
                                |:|..||.| |..:|                              
 Worm   505 KDEVLDFSNPTPTETVNTQPQIDFESSPSASPALSVDKENECEKKEDESKTKEKNKDKEKDKEKE 569

Human   322 ----------------------------------------------------------------- 321
                                                                             
 Worm   570 KSVDEHTNDLDVPINPDDAEMADANDKTDASEKQKLVEEEPTGKENEDDTSSKTAKTSTSAEKSE 634

Human   322 ----------------AQSTS--------TLP-------TTPAPQPPTSSTPSTPF--------- 346
                            |.|||        |:|       .|..|:..|..|...|.         
 Worm   635 APSIVDSNDKIDKEPNASSTSNDETSKDDTVPMESDPPAATEKPKESTEITTEEPLEVDKAPEVD 699

Human   347 -------SDLLM----------------------------------------------------- 351
                   .|:::                                                     
 Worm   700 KSEKEHEDDIMIIESNKKADEDDCVVIAVVDPDQEQTPESEKKKDGEEERDKNKDTDVADNEPEK 764

Human   352 ---------------------------------------------------CPQHRPLVFGLSCI 365
                                                               |.|....:..||.:
 Worm   765 IYTDEELAEIKIRKEKEMKIATLASHIKEKMVSDKKWKEKTSHAGWRTLDQCSQFSEALHLLSSM 829

Human   366 LQTILLCCPSALVWHYSLTDSRIK------------TGSPLDHLPIAPSNLPMPEGNSAFTQQVR 418
            :|.:....|.:.||:    |..::            .|||||:||.....||:.||    .::|.
 Worm   830 VQYMACVTPESFVWN----DLSVQQEERRHRILPQLCGSPLDYLPCELHKLPVMEG----VEEVV 886

Human   419 AKLREIEQQIKERGQAVEVRWSFDKCQEATAGF--TIGRVLHT----LEVLDSHSFERSDFSNSL 477
            ..||....:|..|.||.|.||.      ..|.|  :.||::.|    :.::|:...|:   .|::
 Worm   887 DCLRLRHCEIVRRSQAAEDRWL------PNAAFLQSFGRIIDTCVDVIGIMDNIDVEK---PNAI 942

Human   478 DSLCNRIFGLGPSKDGHEISSDDDAVVS--LLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAER 540
            .:...|:|..      .|.....:|::.  |:.:|.::.:|.|..||..:||||          |
 Worm   943 TNAGLRLFAF------REKFEKQEALLKTMLMFKWCITEEREGSFRATYIAKLL----------R 991

Human   541 CGESEAADEKGSIASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIR 605
            .|..:  :.:.:|....:        .|:..:|:.|:.|   ...|:..:..|.:.|.:..|::|
 Worm   992 FGMDQ--NPENTIGGWQV--------MDLFFKFMSTEGP---KHGSKMYQAHFDSTVAIMIEMMR 1043

Human   606 HDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPEHKEAEGSSSSKLEDPGLSESMDIDP 670
            ..:||.......|....||.:.||                                         
 Worm  1044 EKIFSITDILRELEKDSDLDYNAP----------------------------------------- 1067

Human   671 SSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEV----KPPPKEKIEGTLGVLYDQPRH 731
                |.|...|       ..:|...|....||.||..|.|    :..||....|....|.::...
 Worm  1068 ----LMERQRK-------QKIPKISKRHRKPETPDDTKLVHFTTEYTPKRLFMGKKMDLLERMII 1121

Human   732 VQYATHFPIPQ--EESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLA 794
            :       :||  .:..:.|...|.::|||:....:......:.|.|.|.|....:...|.|:.:
 Worm  1122 I-------LPQLDVDEDTDEYRLRRLLLFGLKPAANVYFRRARAIYKSITKEFTTRLYIEFDRSS 1179

Human   795 PIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSF 859
            .:...:            :|..:||      .:|:..:|:..:::|||.:..::..|.::.|..|
 Worm  1180 KVTTAH------------KKINQNR------LDDLLRQFRAQTYHDQHLILERIVYNFIDGIGGF 1226

Human   860 ALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNE-LSVVEAELLLKSSDLVGS--YTTS 921
            .......:|..:....|.::.|:|:.|:.:.|| .:::|. |..|:.::.....|::..  ||.:
 Worm  1227 LKKNCDDVPAPEVANIICEMYEFSMDITSIFDF-FEMVNPYLKAVDDKIAHFRMDVLPDMYYTET 1290

Human   922 LCLCIVAVLRHY-------HACLILNQ------------DQMAQ---------VFEGLCGVVKHG 958
            ..:.:...::|:       .||.|:||            |.|..         ||.....:...|
 Worm  1291 AFIFVSFFMKHWQRFLLHPRACAIVNQCFVLIQDMIRADDHMITCWGRTVAIFVFHARKAIANAG 1355

Human   959 MNRSDGSSAERCILAYLYDLYTSCSHLKNKFGELFSDFCSKVK-----NTIYCNVEPSESNMRWA 1018
            :...:..:.:    ::.:.::.:..|:....|....||.. ||     .|:..:   |.::.:|.
 Worm  1356 LQNEEFLAED----SHFWRVFPNAQHVDLDVGYFNEDFAG-VKLQLRGGTLRYD---SYNDFKWL 1412

Human  1019 PEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTG 1083
            ...|...|:.            |...:.|..|||||..|.|.......:.||:|::|..||.:|.
 Worm  1413 VSNMKPNLKK------------KPHLKRPNTRYSFVVRAFMEARQHGRNFDRINELANYCANITA 1465

Human  1084 YCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQC-----LLL 1143
            ....||..|:|.:|.||..|.:....|.::...:|:||.|.|.||.||:..|..:..     ||.
 Worm  1466 NDPPLSEYWIGAIKGLCFLSLDAPYPFKEMSQQIDISDCSTHYSLTTFITCLAGKSAFYIPRLLA 1530

Human  1144 E----------------------DLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLN 1186
            |                      |:.|..|..:..:...||  :|||..|...|:..|.      
 Worm  1531 ELTKHVFPLMLRHDGRLTSQKTHDVKRKVASKTTESRTLSE--AEPGVCLCLLIICGLC------ 1587

Human  1187 PCQSDG-----------NKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVL--------GD 1232
             |..|.           .|......::.|..::.......:|.|:|..|..:..|        .|
 Worm  1588 -CVGDEPFGLSVHYRGIEKKKKRFNNTADERIMHLFHWFEMDHAMFRTLGHISQLLEALQSRCRD 1651

Human  1233 AEL-KGSGFTVTG---GTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVG 1293
            |.| ....|.:..   ..:||..|:    :..|.|...||          ||.|...||:|:||.
 Worm  1652 ANLVLPKNFPIKNPPKHQQELHREK----APYRPQYLFNI----------AKTVQFVICEQDWVT 1702

Human  1294 ERCLKSL----CEDSNDLQDPVLSSAQAQRLMQLIC-------YPHRLLDNEDGENPQRQRIKRI 1347
            .|..:..    .|..|  ||.:..:...|:::::..       ..|:|.  |..:..::..:.::
 Worm  1703 LRMFRFFQTRKMEAFN--QDKLKQNCLGQQILRMALRRRTERENVHKLF--EAHKISKKATVDKV 1763

Human  1348 LQNLDQWTMRQSSLELQLMIKQ-TPNNE----------MNSLLENIAKATIEVFQQSAETGSSSG 1401
            |..::.|..|.:..:|.||||: :|:..          .::|:..|.|...::|       .|:.
 Worm  1764 LSFMNLWNFRATLFDLMLMIKEISPDGNSRHAQQGAIAADALMSEIGKCCRDMF-------LSAY 1821

Human  1402 STASNMP-SSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQ----------GHVLKAAGEELEKGQ 1455
            .|...|| :.:.|...||.:.:  .||:|||:...|..:.          |.|  ||....|...
 Worm  1822 KTKIKMPIAKTLTDFRLSDINK--FWLIAPLVRMCPKPINIPPQYANTTVGTV--AAKFLREAAL 1882

Human  1456 HLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQ--DEQREGLLTSLYSQV-------HQIV 1511
            .:.:.....::|..|.|.: :|:.||::::||||:.:  .:.::..|.|||:|:       |...
 Worm  1883 LMDTPPTTPKERLLQCSWA-MSKVPFINMILTCLQCEKMQQSKDVFLQSLYTQLQRETLRDHHRR 1946

Human  1512 NNWRDDQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAMLLLEIIISGTVDMQSNN 1576
            :||.:.:...||         ...|:.|:|.::..:.::|...| |.:|:.:::..|.::.....
 Worm  1947 SNWTNRREHRDC---------TIFRITLIGYIYKEILKATHVET-WGLLIFQLMFHGIINPVREK 2001

Human  1577 ELFTTVLDMLSVLINGTLAADMSSISQ----GSMEENKRAYMNLAKKLQKELGERQSD-SLEKVR 1636
            .::.|..|||..::..|| .|..|::|    ||:......|..|.||::||:.||.:| :...:.
 Worm  2002 LIYETCFDMLHHMVLWTL-VDGDSMNQHDRYGSIRVRWPQYAGLMKKIRKEMQERFTDQTRNSLH 2065

Human  1637 QLLPLPKQTRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLF-EGLK----- 1695
            :.||:.|.....|:                     :||...:....||:|...|. ||||     
 Worm  2066 RFLPIGKMQMSTIS---------------------YKKYQKRPKVNQKMSKKFLAGEGLKNGKYS 2109

Human  1696 --PSAP----------------LSWGW----FGTVRVDRRVARGEEQQRLLLYHTHLRP--RPRA 1736
              |...                :..||    |.|.|:|:.....:...|..::|||:..  ||:.
 Worm  2110 FLPEEKAKTNAFEHTDHLGDLIVKGGWKFRMFQTTRLDKVAKNVQNVLRSNMHHTHVLEFNRPQL 2174

Human  1737 ---------YYLEP----------LPLPPEDEEPPAPTLLEPEKKAPEPPKTDKPGAAPPSTEER 1782
                     .:|.|          .|:|..||| .|....|.||:|.|..:..|      :.|:.
 Worm  2175 LMSDNMFDDIFLAPPDIEITKIIEQPVPVIDEE-EAKKRAEEEKEAAEKKEESK------NAEDE 2232

Human  1783 K-------KKSTK--------------GKKRSQPATKTEDY-----GMGPGRSGPYGVTVPPDL- 1820
            |       ||.||              .|::.:.|:|.:|.     .:....|.....|..|:. 
 Worm  2233 KNKNNAENKKDTKEGEKGKSKDKEKDGEKEKCKDASKKDDVTSEKNELEKRASDAAAATNAPETN 2297

Human  1821 ----LHHPNPGSITHLNYRQGSIGLYTQNQPLPAGGP-------RVDPYRPVRLPMQ-KLP---- 1869
                ...|.|..:|.....:|..|...:|.....|||       |.|..:......| ..|    
 Worm  2298 KDMDTSTPKPAPVTRSPATRGRGGGRKRNSGARGGGPRAKRANSRADTAQAAAATTQWNAPIANT 2362

Human  1870 TRPTYPGVLPTTMTGVMGLEP-----SSYKTSVY------RQQQ--------------------- 1902
            :.|...|.....|   .|.:|     ||.:|.|:      |:::                     
 Worm  2363 SNPAAGGNFHAAM---RGNQPPMSNGSSDETKVHIRNLLNRKKEEKRNSLADASAAAAAANSNAM 2424

Human  1903 ----------PAVPQGQRLRQ--QLQQSQGMLGQSSVHQMTPSSSYGLQTSQGYTPYVSHVGLQQ 1955
                      |.:|.|..::.  ..||.|||    ..|||..|.|...|...|....:||     
 Worm  2425 GNTSSMPPSGPPMPMGSSMQSAGATQQLQGM----QKHQMGGSMSGMNQNMGGMNQSMSH----- 2480

Human  1956 HTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQT 2020
                   ..||     ||.||:....|.:         ...|..|..||..|....|:...|.:|
 Worm  2481 -------QAPP-----PYSSTNEMNRPLM---------NQYGGPHFAAPNPGPLNRSSGPVSSET 2524

Human  2021 LQQT-------------PMISTMTPMSAQGVQAGVR----------------------------- 2043
            .||.             .::.......|:..:|..|                             
 Worm  2525 RQQIMEQQMREKLAAHHQLVEQQKQRDAREREAREREAREHQERMQREAYMKEQQLLERKRAIEE 2589

Human  2044 STAILPEQQQQ-----------------------------------------------QQQQQQQ 2061
            :..|:.|||::                                               |::.:::
 Worm  2590 NNRIMEEQQREREMEAARKEAARRAAEEAYAAEQQRLELLRRQEEERLRKEAEERMRIQRENEER 2654

Human  2062 QQQQQ-----------------------------------QQQQQQQQQQYHIRQQQQQQILRQQ 2091
            .:|:|                                   :|::::|:|:..:|:.::.::.||:
 Worm  2655 VRQEQMRLEAEERERIRRAEEERIQKELEDKVRREKEEAARQEKERQEQEARMREAREAELSRQR 2719

Human  2092 QQQQQQQQQQQQQQQQQQQQQQQQHQQQQ----------QQQAAPP---QPQPQSQPQFQRQGLQ 2143
            .:||::.||.....||.|..||.....||          ||...||   ||..||..|..:.|.|
 Worm  2720 MEQQRRSQQNPYMNQQGQYSQQPPPSYQQSSYPNNYQPGQQGNQPPNYQQPSHQSMQQGHQAGYQ 2784

Human  2144 QTQQQQQTAALVRQLQQQLSNTQPQPSTNIFG 2175
            ||..|.|     ..:|||.:..|..|..:..|
 Worm  2785 QTSNQMQ-----MNMQQQQNRQQGGPQQSFSG 2811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED12NP_005111.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 12..35 8/16 (50%)
Med12 106..161 CDD:462818 18/54 (33%)
Med12-LCEWAV 286..757 CDD:463472 120/977 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 323..344 9/35 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 627..669 2/41 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 690..717 10/30 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1241..1266 5/27 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1394..1415 5/21 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1450..1474 4/23 (17%)
Interaction with CTNNB1 and GLI3. /evidence=ECO:0000269|PubMed:17000779 1616..2051 123/613 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1738..1829 29/131 (22%)
Med12-PQL 1819..2022 CDD:463471 55/263 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1919..1938 8/18 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1967..1989 5/21 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2115..2149 15/46 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2158..2177 6/18 (33%)
dpy-22NP_509645.1 Med12 97..158 CDD:462818 20/63 (32%)
MDN1 <502..>781 CDD:444083 19/278 (7%)
Med12-LCEWAV 815..>990 CDD:463472 50/197 (25%)
DUF4670 <2516..2741 CDD:464815 28/224 (13%)
MAP7 2624..2730 CDD:461709 13/105 (12%)
Glutenin_hmw <2687..3166 CDD:367362 38/130 (29%)

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