DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SV2A and Orct

DIOPT Version :9

Sequence 1:NP_001315603.1 Gene:SV2A / 9900 HGNCID:20566 Length:742 Species:Homo sapiens
Sequence 2:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster


Alignment Length:546 Identity:99/546 - (18%)
Similarity:190/546 - (34%) Gaps:181/546 - (33%)


- Green bases have known domain annotations that are detailed below.


Human   200 SDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLL 264
            |||       :..||:::|:.::|.::|:|||:.....||.:..:|...::....|.::...|::
  Fly   133 SDS-------LFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMI 190

Human   265 SGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYA--AAMAWAIIPHYGWSFQMGSA 327
            .|....|...:.:     .:|.|             |:|..|.  |.:|..:....|:....|.|
  Fly   191 VGATTSGVFLVAY-----VIALE-------------MVGSSYRLFAGVAMQMFFSVGFMLTAGFA 237

Human   328 YQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVF 392
            |..|.||...:....|.:..:......|||.|:.|..|:.|||::::::....|....  |..::
  Fly   238 YFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEV--PNEIY 300

Human   393 S--VTHIKTIHQEDELIEIQSDTGTWYQ--RWGVRALSLGGQVWGNFLSCFGPEYRRITLMMMGV 453
            .  |..:....::||:...| ...|.:.  |:                    |..||.||::...
  Fly   301 EQLVDEVAEKKKQDEMAASQ-PAATVFDLLRY--------------------PNLRRKTLLIFFD 344

Human   454 WFTMSFSYYGLTVWFPDMIRHLQAVDYASRTKVFPGERVEHVTFNFTLENQIHRGGQYFNDKFIG 518
            ||..|..||||: |                                   |..:.||         
  Fly   345 WFVNSGVYYGLS-W-----------------------------------NTNNLGG--------- 364

Human   519 LRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKFVNSRLINSTFLHNKEGC 583
                                                              ::|:|  |:      
  Fly   365 --------------------------------------------------NQLVN--FM------ 371

Human   584 PLDVTGTGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCVSCFFLSFGNSE 648
               ::|..|                :||..:....:::.||..:|.|:.:::.:|.....|..|:
  Fly   372 ---ISGAVE----------------IPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSD 417

Human   649 SAMIALLC-LFGGVSI-ASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVG-I 710
            ...:.:.| :.|.::| :|:..:.:.:.|.:|:..|....|..:.:.::..:|  :.:...:| |
  Fly   418 MNWLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGIL--APYLKLLGEI 480

Human   711 TKAAPILFASAALALGSSLALKLPET 736
            .:..|::...|.......|:|.||||
  Fly   481 WRPLPLIICGALSLTAGLLSLLLPET 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SV2ANP_001315603.1 synapt_SV2 1..742 CDD:130366 99/546 (18%)
Interaction with SYT1. /evidence=ECO:0000250 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..144
OrctNP_001262908.1 2A0119 11..514 CDD:273328 99/546 (18%)
MFS 135..491 CDD:119392 90/527 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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