DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRIG2 and haf

DIOPT Version :9

Sequence 1:NP_055628.1 Gene:LRIG2 / 9860 HGNCID:20889 Length:1065 Species:Homo sapiens
Sequence 2:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster


Alignment Length:935 Identity:197/935 - (21%)
Similarity:339/935 - (36%) Gaps:238/935 - (25%)


- Green bases have known domain annotations that are detailed below.


Human   129 HNIIPEINAQ-----------ALQFYPALESLDL---SSNIISEIKTSSFPRMQLKYLNLSNNRI 179
            :|:..|::.|           |:..:..|:.:||   :::.|||:..:.|..:.|..|.||:..|
  Fly    52 YNLGRELSVQCDQVDFSQLLAAMNTHARLKPVDLLYVNNSTISELPDAVFSNLSLHNLQLSSCGI 116

Human   180 TTLEAGCFDNLSSSLLVVKLNRNRMSMIPPKIFK-LPHLQFLELKRNRIKIVEGLTFQGLDSLRS 243
            ..:..|.|....|.|..:.|..|.::.:|.:..| |..|..|:|.:|::..:....|.||..|.:
  Fly   117 QRIATGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLST 181

Human   244 LKMQRNGISKLKDGAFFGL-NNMEELELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDA- 306
            ||:..|.:: |...||.|| .:::.|.|:.....:|.:. :.||:.|..|.:|||.|:.: |.| 
  Fly   182 LKLNDNNVT-LASNAFRGLEQSLKNLNLKGTKQRKVPES-IRGLKSLAFLDLSQNGIKEL-PGAG 243

Human   307 ----WEFCQRLSELDLSYNQLTRLDESAFVGL-SLLERLNLGDNRVTHIADGVFRFLSNLQTLDL 366
                ::....|:.|:|..|.:..:.|:||.|: ..|..|:|.:|.:.....|....|..|:.||:
  Fly   244 GIRVFDGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLDI 308

Human   367 RNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNNAIMSIQENAFS 431
            ..|.:: ::.:|  ||.|...:|.|.|.||.:.|:.:.||      .||:..             
  Fly   309 GFNLLT-SLPEA--AFRGNPGITLLALDGNPLSSVPEGAF------AHLNAT------------- 351

Human   432 QTHLKELILNTSSLLCDCHLKWLLQWLVDNNFQHSVNVS----CAHPEWLAGQSILNVDLKDFVC 492
               |:.|.|....|.|||.|:|:.:|:.:.:.|.:....    |..|.....:...::..::..|
  Fly   352 ---LRGLSLGGRFLHCDCKLRWVAEWIRNGDLQVTSRERNPQFCGTPPRFRDRGFYSIQPEELSC 413

Human   493 DDF--------------LKPQIRTHPETIIALRGMN-------------VTLTCTAVSSSDSPMS 530
            .|.              |||.:.:.|:::....|..             ||.:.::.:|:.:|.:
  Fly   414 PDIADAALRGPVGLADNLKPTLPSSPDSVEYETGTGTGTVGTGTAASAPVTSSVSSSTSTTTPTT 478

Human   531 TVWRKDSEILYDVDTENFVRYWQQAGEALEYTSILHLFN--VNFTDEGKYQCIVTNHFGSNYSQK 593
            |.....:|   .....:..|...::...:..|:.....|  ||.|...:...|.|:...|:.|..
  Fly   479 TTTTTTAE---PTTRRSTTRPPTKSTTTISATTASPASNPPVNGTGTVQATSITTSSSSSSSSST 540

Human   594 AKLTVN--EMPSFLKTPMDLTIRTGAMARLECAAEGHPAPQ-----ISWQKDGGTDFPAARERRM 651
            :....|  :.|.:.:...:....:|.     ..|.|...||     :.:....||....|.|.::
  Fly   541 STGHGNGKQAPGWRQGVTNGNGNSGV-----GGAGGLHKPQRPPLVLGYPPQRGTRIDDANEVQV 600

Human   652 -HVMPEDDVFFI------ANVKIEDMGIYSCMAQNTAGGLSANASLTVLETPSFIRPLEDKTVTR 709
             |...:|....|      ||:                                    |..:.|.|
  Fly   601 KHAFRQDSSVIIQWDSDTANI------------------------------------LGFRVVYR 629

Human   710 --GETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCIMSNTL 772
              ||.|.                |...||..:||.|             .:::.....||:...:
  Fly   630 LFGEKAF----------------KQGPPLESSEREF-------------KIKNVPAQECIIVCVI 665

Human   773 GTERGHIYLNVISSPNCD-----SSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIV-IYHM 831
            ..|..|:....:....|.     :||:|         .:..:.|.....:.||.::.||| |...
  Fly   666 SLEELHVTPETVPYQQCREVRTVASQAS---------NMDKITIAASAAICGTIIVAVIVFIAAS 721

Human   832 RRKNEDYSITNTEELNL---------PADIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGY 887
            ||..:..|......|.:         |...|..|.|..|||    .::|                
  Fly   722 RRSRKLQSSQQKSPLPIGGLPVNCCGPTGSPGPLGSIATLS----AFNN---------------- 766

Human   888 IHKGTDGGTGTRVICSDCYDNANIYSRTREYCPYTYIAEE-DVLDQTLSSLMVQMPKETYLVHPP 951
             ||.              :|..:.||......|..|..|: |.:....|.:..::.|...|.   
  Fly   767 -HKE--------------WDQVSAYSGRSIPRPRIYPVEQPDDMRSHFSGMPGKVGKSRSLA--- 813

Human   952 QDTTALESLIPSANRE--PSAFPTN 974
             |..:..|...:::|.  .||||:|
  Fly   814 -DGQSQHSFSNNSHRGYLGSAFPSN 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRIG2NP_055628.1 LRR_RI <46..205 CDD:238064 22/89 (25%)
LRR 1 76..97
LRR 2 98..119
leucine-rich repeat 99..121 CDD:275380
LRR_8 120..179 CDD:290566 15/63 (24%)
LRR 3 121..142 4/23 (17%)
leucine-rich repeat 122..145 CDD:275378 4/26 (15%)
LRR 4 145..166 7/23 (30%)
leucine-rich repeat 146..168 CDD:275380 7/24 (29%)
LRR_8 168..251 CDD:290566 25/83 (30%)
LRR 5 168..189 7/20 (35%)
leucine-rich repeat 169..192 CDD:275380 7/22 (32%)
LRR 6 193..214 5/21 (24%)
leucine-rich repeat 194..216 CDD:275380 6/22 (27%)
LRR 7 216..237 5/20 (25%)
leucine-rich repeat 217..240 CDD:275380 7/22 (32%)
LRR_8 240..299 CDD:290566 19/59 (32%)
LRR 8 240..261 7/20 (35%)
leucine-rich repeat 241..264 CDD:275380 9/23 (39%)
LRR 9 264..285 3/20 (15%)
leucine-rich repeat 265..288 CDD:275380 5/22 (23%)
LRR_RI 266..492 CDD:238064 58/235 (25%)
LRR 10 288..309 8/25 (32%)
leucine-rich repeat 289..312 CDD:275380 8/27 (30%)
LRR_8 312..371 CDD:290566 18/59 (31%)
LRR 11 312..333 7/20 (35%)
leucine-rich repeat 313..336 CDD:275380 8/23 (35%)
LRR 12 336..357 5/20 (25%)
leucine-rich repeat 337..360 CDD:275380 6/22 (27%)
LRR_8 359..422 CDD:290566 18/62 (29%)
LRR 13 360..382 5/21 (24%)
leucine-rich repeat 361..385 CDD:275380 7/23 (30%)
LRR 14 387..408 8/20 (40%)
leucine-rich repeat 388..411 CDD:275380 8/22 (36%)
LRR 15 411..432 2/20 (10%)
leucine-rich repeat 412..434 CDD:275380 2/21 (10%)
LRRCT 445..493 CDD:214507 10/51 (20%)
Ig 502..598 CDD:299845 18/110 (16%)
IG 504..598 CDD:214652 18/108 (17%)
I-set 602..692 CDD:254352 15/101 (15%)
Ig_1 619..693 CDD:143240 13/85 (15%)
I-set 696..783 CDD:254352 16/88 (18%)
Ig 714..783 CDD:299845 10/68 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 962..990 6/15 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1003..1040
hafNP_001356954.1 LRR <52..>252 CDD:227223 54/202 (27%)
leucine-rich repeat 86..105 CDD:275380 4/18 (22%)
leucine-rich repeat 106..129 CDD:275380 7/22 (32%)
LRR_8 131..189 CDD:338972 17/57 (30%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 155..178 CDD:275380 7/22 (32%)
leucine-rich repeat 179..202 CDD:275380 9/23 (39%)
leucine-rich repeat 203..225 CDD:275380 5/22 (23%)
leucine-rich repeat 226..253 CDD:275380 8/27 (30%)
LRR_8 254..337 CDD:338972 27/85 (32%)
leucine-rich repeat 254..302 CDD:275380 14/47 (30%)
leucine-rich repeat 303..326 CDD:275380 8/25 (32%)
leucine-rich repeat 327..350 CDD:275380 10/28 (36%)
PCC 332..>413 CDD:188093 21/102 (21%)
PRK10927 <1061..>1097 CDD:236797
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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