DRSC/TRiP Functional Genomics Resources

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Protein Alignment CROCC and MED1

DIOPT Version :10

Sequence 1:NP_055490.4 Gene:CROCC / 9696 HGNCID:21299 Length:2017 Species:Homo sapiens
Sequence 2:NP_015395.1 Gene:MED1 / 856183 SGDID:S000006274 Length:566 Species:Saccharomyces cerevisiae


Alignment Length:589 Identity:115/589 - (19%)
Similarity:187/589 - (31%) Gaps:194/589 - (32%)


- Green bases have known domain annotations that are detailed below.


Human    61 QPESPVLLPATEMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQA---- 121
            :|.|..|...|.:...|.|:...:.|..||||:     .:.::...:.:.||...:|::..    
Yeast    22 KPGSITLENITRLCQTLGLESFTEELSNELSRL-----STASKIIVIDVDYNKKQDRIQDVKLVL 81

Human   122 ---------LRLEPGELETQEPRGLVRQSV----ELR---------------------------- 145
                     .....||   .|...::..|:    :|:                            
Yeast    82 ASNFDNFDYFNQRDGE---HEKSNILLNSLTKYPDLKAFHNNLKFLYLLDAYSHIESDSTSHNNG 143

Human   146 ---RQLQEEQASYRR--KLQAYQEGQQRQAQLVQRLQGKILQYKKRCS----------------- 188
               :.|....||:..  ||..::...:....:.|..|.....:|.|.:                 
Yeast   144 SSDKSLDSSNASFNNQGKLDLFKYFTELSHYIRQCFQDNCCDFKVRTNLNDKFGIYILTQGINGK 208

Human   189 --ELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQ---VNAMLREQLDQAGS 248
              .|.:..||.:....|.|..:..:||:.:|.:....|......||..   .||......|....
Yeast   209 EVPLAKIYLEENKSDSQYRFYEYIYSQETKSWINESAENFSNGISLVMEIVANAKESNYTDLIWF 273

Human   249 ANQALSED--IRKVTNDWTRCRKELEHREAAWRREEESFNA--------YFSNE--HSRLLLLWR 301
            ....:|.:  |.|||     |                |.|:        .|||.  :||:.|:  
Yeast   274 PEDFISPELIIDKVT-----C----------------SSNSSSSPPIIDLFSNNNYNSRIQLM-- 315

Human   302 QVVGFRRLVSEVKMF-TERDLLQLGGELARTSRAVQEAGLGLSTGLRLAE--SRAEAALEKQALL 363
              ..|...:..:|.| ...|.|.|..|:.:.   ||.:.:.|....:|..  |....:.|.:...
Yeast   316 --NDFTTKLINIKKFDISNDNLDLISEILKW---VQWSRIVLQNVFKLVSTPSSNSNSSELEPDY 375

Human   364 QAQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVTELGLAVKRLEKQNLEKDQVNK----DLT 424
            ||......:||            .|.....:...|....|..|   |.....:...||    .:|
Yeast   376 QAPFSTSTKDK------------NSSTSNTEPIPRSNRHGSVV---EASRRRRSSTNKSKRPSIT 425

Human   425 E----KLEALESLRLQE---QAALETEDGEGLQQ--TLRDLAQ-----AVLSDSES--------- 466
            |    |.|.|:...|.|   :.|:|.|:|:.:::  |..|.|.     |.:|:.|:         
Yeast   426 EAMMLKEEGLQQFNLHEILSEPAIEEENGDSIKEHSTTMDGANDLGFTASVSNQENAGTDIVMED 490

Human   467 -GVQLSGSER-----TADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIH 525
             || |.|:.:     |||.::..::.:|.:  ||.|                    :||.|.||.
Yeast   491 HGV-LQGTSQNYGTATADDADIEMKDVSSK--PSKP--------------------ESSVLQLIV 532

Human   526 SALH 529
            |..|
Yeast   533 SEDH 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROCCNP_055490.4 Smc <76..>672 CDD:440809 111/574 (19%)
Rootletin 156..332 CDD:464459 41/212 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 464..518 12/68 (18%)
Smc <555..>1057 CDD:440809
Smc <816..>1368 CDD:440809
SMC_prok_B 1135..1927 CDD:274008
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1184..1226
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1443..1575
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1962..2017
MED1NP_015395.1 Med1 12..>173 CDD:463183 24/158 (15%)
Blue background indicates that the domain is not in the aligned region.

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