DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLINT1 and lqfR

DIOPT Version :9

Sequence 1:NP_001182484.1 Gene:CLINT1 / 9685 HGNCID:23186 Length:643 Species:Homo sapiens
Sequence 2:NP_732736.2 Gene:lqfR / 42632 FlyBaseID:FBgn0261279 Length:1415 Species:Drosophila melanogaster


Alignment Length:641 Identity:232/641 - (36%)
Similarity:307/641 - (47%) Gaps:157/641 - (24%)


- Green bases have known domain annotations that are detailed below.


Human     2 LNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWS 66
            ::|||||||.||.|||||||:|.|.|||||||||||||:|.||.|:|.:||.||.|||:|:|||.
  Fly     6 ISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQELAYSTFSYETFPEVMSMLWK 70

Human    67 RMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQK 131
            |||:|||.||||.|||||||.||:||||||||||:|||||||||||||.|.||.|||||||:|.|
  Fly    71 RMLQDNKTNWRRTYKSLLLLNYLVRNGSERVVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHK 135

Human   132 VKELVEFAQDDDRLREERKKAKKNKDKYVGVSSDSV---------------GGFRYSERY-DPEP 180
            |:||::|.||||||||||||||||||||:|:|||::               ||...|..| |.:.
  Fly   136 VRELIDFIQDDDRLREERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDY 200

Human   181 KSKWDEEWDKNKSAFPFSDKLGELSDKIGSTIDDTISKFRRKDREDSPERCSDSDEEKKAR---- 241
            :|...:.|..:|||           ||.....|||        ..|.....||||.....|    
  Fly   201 RSSRGDNWYSDKSA-----------DKDRYEDDDT--------HYDGEREGSDSDSPSPRRNYRY 246

Human   242 RGRSPKGEFKDEEE------TVTTKHIHITQATETTTTRHKRTANPSKTIDLGAAAHYTGDKASP 300
            ..|:...|...|.:      .:.:|.:....:.:.|:|...:.|...|.|||||||::  .|.:|
  Fly   247 NDRASPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGAAANF--GKPAP 309

Human   301 DQNASTHTP-QSSVKTSV-------PSSKSS----------GDLV-DLF---------------- 330
            ...|..|:| .....|||       ||..:|          .||: |||                
  Fly   310 GGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNNNDLLDDLFKTCSPPPGQEKTLNSA 374

Human   331 --------DGTSQSTGGSADLFGGFAD-FGSAAASGSF---PSQVTATSGNGDFGDWSAFNQAPS 383
                    |...:::..|...||.||. ||..:|..:.   ||.....:.|.:|.|::||..:.:
  Fly   375 AVIVDDDDDFNPRASDASQQEFGDFASAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTT 439

Human   384 GPVASSGEFFGSASQPAVELVSGSQSALGPPPAASNSSDLFDLMGSSQATMTSSQSMNFSMMSTN 448
            ...|..|....:|:                  .|::|.|||:...:|.|..|::..:        
  Fly   440 STSALDGNLLKTAT------------------PANDSFDLFNSAPTSTAAATTATDL-------- 478

Human   449 TVGLG-LPMSRSQPLQNVSTVLQKPNPLYNQNTDMVQKSVSKTLPSTWSDPSVNISLDNLLPGMQ 512
            ..||| |.:.:|.|:                       :|.:.|.|: :|            .|.
  Fly   479 LAGLGDLSIHQSMPM-----------------------AVEEQLASS-ND------------SMS 507

Human   513 PSKPQQPSLNTMIQQQNMQQPMNVMTQSFGAVNLSSPSNMLPVRPQTNALIGGPMP 568
            .:.||.||....:.....|:.:..:.|...|..::..:.:|.....:|||.|...|
  Fly   508 SASPQPPSEAMRLAFSKAQKQLRDLMQVQSASAVAQVAAILGELHNSNALPGFTTP 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLINT1NP_001182484.1 ENTH_EpsinR 24..149 CDD:340786 96/124 (77%)
Nucleoporin_FG 329..407 CDD:372653 21/105 (20%)
lqfRNP_732736.2 ENTH_epsin 27..150 CDD:239627 94/122 (77%)
DUF4045 <226..459 CDD:289995 57/252 (23%)
Telomere_reg-2 1072..1184 CDD:287202
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141860
Domainoid 1 1.000 206 1.000 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG2057
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H133740
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005493
OrthoInspector 1 1.000 - - oto91013
orthoMCL 1 0.900 - - OOG6_103183
Panther 1 1.100 - - LDO PTHR12276
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2102
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
109.770

Return to query results.
Submit another query.