DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TRAF4 and Traf4

DIOPT Version :9

Sequence 1:XP_011523806.1 Gene:TRAF4 / 9618 HGNCID:12034 Length:477 Species:Homo sapiens
Sequence 2:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster


Alignment Length:406 Identity:183/406 - (45%)
Similarity:261/406 - (64%) Gaps:11/406 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    73 IYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHL 137
            |||.|:.: .::|..:.|||.::||:||..||.|:||||.|..:...|||:|..::.|..:..||
  Fly    90 IYPGPDPK-HIMGSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMTDHL 153

Human   138 QHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPC 202
            |:.|..||.:||||..:|||...|.|.|.|.||.||||.|||.|::|..:..|.:.:|.||.:.|
  Fly   154 QYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILRGRMTLHKSKDCAKRLRRC 218

Human   203 TYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHR 267
            .:|.:||..||:..|..||||.|:|||.:|..|.:.|.:|..||:|.|.:..|.|.||::||:.:
  Fly   219 AHCQREFSADTLPLHAAQCPRAPLACPQRCDAGPIPRGELEAHLRDECQSLAVSCSFKEAGCRFK 283

Human   268 CPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAK 332
            .|:..:..|:|.:...||::|.||.|||.|::|.|:..:.:||:...|.|:|||..:..::.||:
  Fly   284 GPRQMLEAHLESNAAAHLSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEAR 348

Human   333 AKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSL 397
            .|..||..||.|||.:||||||.|.||||||.||.||:|:||:||||.:|.||:|||:..:||:|
  Fly   349 GKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTL 413

Human   398 LDQSDPGLAKPQ-HVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDD 461
            .:|   |....| .|.|:|.|||.|:|||:|     |.:...||||:|:||||:.:..|.:::.|
  Fly   414 FEQ---GAQSGQGGVAESFVPDPTWENFQRP-----SNEPDQLGFGFPRFISHELLHSRPFIKGD 470

Human   462 AVFIRAAVELPRKILS 477
            .||:|..|: |.||::
  Fly   471 TVFLRVKVD-PSKIVA 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAF4XP_011523806.1 RING 18..55 CDD:238093
zf-TRAF 109..163 CDD:280357 23/53 (43%)
zf-TRAF 217..276 CDD:280357 24/58 (41%)
MATH_TRAF4 315..470 CDD:239750 77/155 (50%)
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 45/96 (47%)
zf-TRAF 233..292 CDD:424248 24/58 (41%)
MATH_TRAF4 331..479 CDD:239750 77/155 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165160148
Domainoid 1 1.000 192 1.000 Domainoid score I3228
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3173
Inparanoid 1 1.050 398 1.000 Inparanoid score I1957
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48494
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 1 1.000 - - FOG0004698
OrthoInspector 1 1.000 - - oto89226
orthoMCL 1 0.900 - - OOG6_100533
Panther 1 1.100 - - LDO PTHR10131
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3301
SonicParanoid 1 1.000 - - X4401
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1514.940

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