DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NCOR1 and Smr

DIOPT Version :10

Sequence 1:XP_005256923.1 Gene:NCOR1 / 9611 HGNCID:7672 Length:2524 Species:Homo sapiens
Sequence 2:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster


Alignment Length:3318 Identity:691/3318 - (20%)
Similarity:1061/3318 - (31%) Gaps:1184/3318 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    12 AFSTEQSRYPPHSVQYTFPNTRHQQEFAVPDYRSSHLEVSQASQLLQQQQQQQLRRRPSLLSEFH 76
            |.:...:..|||      |..:|||:........:|.:..|.|...|.|||||.:...|..|.  
  Fly   555 ANANNMNHLPPH------PQQQHQQQQQQQQQHQAHQQQHQRSSPAQVQQQQQQQMNSSRQSH-- 611

Human    77 PGSDRPQERRTSYEPFHPGPSPVDHDSLESKRPRLEQVSDSHFQR-------------VSAAVLP 128
              :|..::..|         :|:.........|:.:|....|.|:             ||:....
  Fly   612 --NDMCRQVVT---------TPMGMQLKVETLPQQQQKQQQHQQQQQQQQQQGRSQPVVSSMSTV 665

Human   129 LVHPL------PEGLRASADAKKDPAFGGKHEAPSSPI-SGQPCGDDQNAS-------------- 172
            :..|:      ..||.||            |...|..: :|...|:..:||              
  Fly   666 VSQPVGTVTVTTAGLSAS------------HSGSSGNVAAGLGTGNTGSASTEAYHPQVEAISPT 718

Human   173 -PSKLS---------KEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEA--AKPPEPEKPVS- 224
             ||..|         ||:|:..:.:||.||...|..:..|:||::.|.|||  ||.....|.:: 
  Fly   719 LPSDSSIEERGRTSAKEDLLMQIQKVDNEIKSAETTMETLRKKEKSLMEEAALAKEQRAAKELND 783

Human   225 -----PPPVEQKHRS--IVQIIYDENRKKAEEAHKIFE----------GLGPKVELPLYNQPSDT 272
                 .|.||...||  :.:.||..|||.|:..|.:.:          .:..:..|||||||.|.
  Fly   784 NNNDQEPMVELSWRSQMLAEKIYAANRKTAQAQHSMLQNAAADESSPGSVAGRPWLPLYNQPLDV 848

Human   273 KVYHENIKTGVPARRMMKNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENN 337
            :.....|       |..::|: |..|:|..::....|....|.:.::|.:....|:::.:|:|.:
  Fly   849 EALAMLI-------RQHQSQI-RAPLLLHIRKLKAERWAHNQGLVEKYTKDQADWQRRCERMEAS 905

Human   338 PRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQENN 402
            .:|||:|:|.||::||.|.|:|||||.:|||.|||.|        .:||.::.||:|||.||...
  Fly   906 AKRKAREAKNREFFEKVFTELRKQREDKERFNRVGSR--------IKSEADLEEIMDGLQEQALE 962

Human   403 EKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKN 467
            :|:||..:||||:|.||.|||..:.|.|||:||.:.|::.|:.:|:||..|||.||:|::|||||
  Fly   963 DKKMRSYAVIPPLMHDARQRRCAYHNENGLIEDMVAVHQQRKALNMWTAGEKETFKEKYLQHPKN 1027

Human   468 FGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQQIARPSQEEKVEEKEEDKA 532
            ||.||:.|:|||..|||.||||:||.||||.|:|::..:.|.......|:.:|.:.:.:......
  Fly  1028 FGAIAASLDRKSPQDCVRYYYLSKKTENYKQLLRKSRQRTRSSRNPAKAQAAQPQCIIDSMTTGV 1092

Human   533 EKTEKKEEEKKD--------EEEKDEKEDSKENTKEKDKIDG--TAEETEERE-------QATPR 580
            ....::|:::|.        |.|:.|:...:|...||...|.  .||...|:.       :||..
  Fly  1093 MTRLQREQQQKSGGRSSAVAERERAERAAERERVAEKAAADAAKAAESAAEKASAATKAVEATAA 1157

Human   581 GRK--------------TANSQGRRKGRITRSMTNEAAAASAAAAA------------------- 612
            |.|              ||.:........|.|.::.|::||.|:::                   
  Fly  1158 GEKVAKAAAAAAAAAATTATTATTTTSSSTSSSSSSASSASTASSSTASPATLAGIAADKTDAGK 1222

Human   613 ----------------ATEEP-----PPPLPPPPEPISTEPVETSRWTEEE-------MEVAKKG 649
                            ||..|     |.....||| ||......|:..|||       ..||..|
  Fly  1223 TASASDKNAATAGGPTATGTPTAATTPATATAPPE-ISAGGEAKSKNAEEEAAATAGAATVATAG 1286

Human   650 LVEHGRNWAAIAK---MVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTSRKPREERDVSQCES 711
            ....|.:.|:..:   ..|..:.|..|..                .|.:|:.:|           
  Fly  1287 TPATGASAASAGEATTATGATATAAAKGV----------------GKPETATEP----------- 1324

Human   712 VASTVSAQEDEDIEA-------SNEEENPE--DSEGAENSSDTESAPSPS-PVEAV-----KP-- 759
             |.|.:...|...:|       :::..|.|  ::.|..:||.:.:|...| ||:.|     ||  
  Fly  1325 -AGTAAKGADSRPDANDPLAKTASKAINAEGYNAIGGNSSSSSSNATGASAPVQGVTLNGFKPGY 1388

Human   760 -------------SEDSPENATSRGNTEPAVELEPTTETAPS------TSPSLAVP---STKPAE 802
                         .:||..||   |...|..........|.|      |:||...|   |:..|.
  Fly  1389 QTVVMANVKASTGGDDSGANA---GGAAPGSLAATNASIATSGDKIVKTTPSSRAPNSTSSTAAN 1450

Human   803 DESVETQVN----------------------DSISAETAEQMDVDQQE------HSAEEGSVCDP 839
            :.|....||                      :.:.|......||.:.:      :|.|.|.    
  Fly  1451 ESSSGAGVNTYGHTATTAGNYLGQKLKAAQVEGLGAGNELHSDVSESKRKRFELNSGEAGG---- 1511

Human   840 PPATKA---DSVDVEVRVPENHASKVEGDNTKERDLDRASEKVEPRDEDLVVAQQINAQRPEPQS 901
             .||.|   .|....:.:..:|..|.   |.|:..:...:.........:||....:|......|
  Fly  1512 -NATSAMTNSSTSGSMNISNSHGLKA---NAKDGSMMAKTSMASTSSASVVVTSTPSASSSSLSS 1572

Human   902 -------------------DNDSSATCSADEDVDGEP-----------ERQRMFPMDSKPSLLN- 935
                               .:.|:||.:|.......|           ....:..:|.|..|.: 
  Fly  1573 ASSMLLISAASVMSTAAGATSSSTATTTATASAISLPLLADGSGNSMVNANEILALDGKDKLASC 1637

Human   936 -----------------------------PTGSILVSS---------------PLKPNPLD---- 952
                                         |.|:.:.:|               |..|||.|    
  Fly  1638 FVCKAEACPRTRPLKKGRGQQYGIPDETIPAGARVCNSCQCKSVRSRYPNCPLPTCPNPKDRAQR 1702

Human   953 ---LPQLQHRAA-----------VIPPMVS--CTPC------------NIPIG------------ 977
               :|......|           .|||..:  |:.|            |:..|            
  Fly  1703 LRNIPSRLFELAPEVRDPLMAEFQIPPHATRCCSACLMRIRRKLDPQLNLTDGSSGGAGSGSGGD 1767

Human   978 -TPVSGYAL------------------YQRH-----IKAMHESALLEEQRQRQEQ---------- 1008
             |.||..:.                  .|||     :|...:....::|:|:|:|          
  Fly  1768 ETDVSTSSCDEREPGGSDTASVESPENLQRHKSLTMVKQQQQQQQQQQQQQQQQQQQQQQQLSQP 1832

Human  1009 ------------------------IDLECRSSTS----------------PCGTSKSPNR----- 1028
                                    |....|.|:.                |....::|.:     
  Fly  1833 QPPPPAPQQQKGSSGRGGDQGTPLIITPTRMSSKSGSGGAQTAGDNERLLPPAAGQAPKKQKTSE 1897

Human  1029 EWEGKS------------------------------------------VAYM-------PYAEVK 1044
            |::..:                                          ||.|       |.....
  Fly  1898 EYDSSATETADEENENSPANRQSPKVLFHGHGHGHGGHANNVAGLQPPVANMGTGGGVQPGGAAG 1962

Human  1045 RALEQEAQMHNTAARSASPCRLS--PREVSKAAPQP----------------------------- 1078
            :.:.....|...|..:...|..|  .|.:....|||                             
  Fly  1963 QQVNGPISMRREAVNNVQDCVFSVIERSLKHKGPQPKGGQGQQQGQGQGQGQGQGQTPGQSQSPS 2027

Human  1079 ------------------DMSAAR-YSVPPVL-------QPA----PHQVITNLPEG--VRLPTT 1111
                              :::..| |...|.:       |.|    |.....:||.|  |:..||
  Fly  2028 QQQQQQQQQQSANNLERKELTIVREYRQDPGILKQQQQQQQAGGAPPTSAAGSLPHGTSVQKLTT 2092

Human  1112 RP--TRPPPPLIPSSKTTVASEKPSFIMGGSISQGTPGTYLT-----SHNQASYTQETPKPSVGS 1169
            ||  ..||||..|.:.|:..       ..|| :.||..:..|     ||             :|.
  Fly  2093 RPAAVAPPPPAHPLTPTSTG-------CAGS-NNGTSDSLATLSVVNSH-------------MGM 2136

Human  1170 ISLGLPRQQESAKSA---------TLPYIKQEEFSPRSQNSQPEGLLVRAQHEGVVRGTAGAIQE 1225
            :.:|.|.....|.||         ..|.:|....|.:|..............|.::.....|..:
  Fly  2137 VGIGHPGPMAHASSAGGIGVDKATITPVVKSSSGSSKSGGGSASSHSTATPPETIIYNVPVAHPQ 2201

Human  1226 GSITRGTPTSKISVESIPSLRGSITQGTPALPQTGI-----------PTEALVKGSISRMPIEDS 1279
                ||.|..  |..|:.....|.|| .||.||...           |....:..||.:.|.:..
  Fly  2202 ----RGIPPP--SQHSVHPAHPSHTQ-HPAHPQHSSHGQHTQLQVPEPEPQTLDLSIKKPPRDGH 2259

Human  1280 SPEKGREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEISLKRSYESVEGNIKQGMSM 1344
            ||..|...::|.|    .|..|     .:..:...|...|    .:|:|....|  |.:.:|.::
  Fly  2260 SPHTGAGGSSSSG----SGSGG-----PSSSDRHHGPPPP----TMSMKHIVRS--GGMYRGDTV 2309

Human  1345 RESPVSAPLE--------------GLICRALPRGSPHSDLKERTV-------LSGSIMQG--TPR 1386
            ....::||..              |::...|| |.|.|.|..:.|       :||   ||  .||
  Fly  2310 TVPSLAAPSSYLYPTRSVKTIGGGGVVPGVLP-GVPGSALYLQPVPVPVPISISG---QGQLPPR 2370

Human  1387 ATTESFEDGLKYPKQIKRESPPIRAFEGAITKGKPYDGITTIKEMGRSIHEIP------------ 1439
            |       |...|.|     ||                      .||.:.::|            
  Fly  2371 A-------GQPPPAQ-----PP----------------------SGRGVAKVPPKLSPQQAHHLH 2401

Human  1440 ------------RQDILTQESRKTPEVVQSTRPIIEGSISQGTPIKFDNNSGQSAIKHNVKSLIT 1492
                        :|....|:.::.....|....:..|||:.|||.   |::.|..|.|...:...
  Fly  2402 PSHGHSPSQQQQQQQQQQQQQQQQAAAAQQQLLVKSGSITHGTPA---NSAQQQIIVHAPATAAA 2463

Human  1493 GPSKLSRGMPP------LEIVPENIKVVERGKYEDVKAGETVRSRHTSVVSSGPSVLRSTLHEAP 1551
            .||.|   :.|      .:..||.:..|..|       |.:...:|.|:....|      ||..|
  Fly  2464 APSSL---LSPKFDGLVRQTTPEGVGSVGPG-------GASGSGKHGSITQGTP------LHMPP 2512

Human  1552 KAQLSPGIYDDTSARRTPVSYQNTMSRGSPMMNRTSDVTISSNKSTNHERKSTLTPTQRESIPAK 1616
                     ....::|...||..:..|.||          :.....|.:    |.|..::|.|..
  Fly  2513 ---------HHLESKRPYESYYKSSQRHSP----------AQQPGGNQQ----LPPPPQQSSPQA 2554

Human  1617 SPVPGVDPVVSHSPFDPHHRGSTAGEVYRSHLPTHLDPAMPFHRALDPAAAAYLFQRQLSPTPGY 1681
            .|..|....||                            .|:.|               ||..|.
  Fly  2555 PPPQGYGVGVS----------------------------SPYAR---------------SPFAGV 2576

Human  1682 PSQYQLYAMENTRQTILNDYITSQQM---------QVNLRPDVARGL----------------SP 1721
            ..|.|:.   :|||.:::||||||||         |...:.:::||.                ||
  Fly  2577 VEQPQVL---STRQIVMHDYITSQQMQGQQQQQQQQQQQQRNMSRGSSASGGGGGGGSDKESPSP 2638

Human  1722 REQ----------------PLGLP-YPATRGIIDLTNMPPTILVPHPGGTSTPPMDRITYI---- 1765
            |..                |.|.| |.:.....|..|..|:   ||    .|||..|...|    
  Fly  2639 RNSVGSASGFAYGGDKESAPRGRPEYSSRASPADHVNSTPS---PH----RTPPPQRQGVIQRHN 2696

Human  1766 -----------PGTQITFPPRPYNSASMSPGHPTHLAAAASAEREREREREKERERERIAAASSD 1819
                       |.:::..||..|..:    ||....:....|.::.:.....:::.:        
  Fly  2697 TGSKPPSPAAPPPSRMHMPPYQYAPS----GHDALASFVDVAVQQPQLPVPSQKDDK-------- 2749

Human  1820 LYLRPG-SEQPGR-PGSHGYVRSPSPSVRTQETMLQQRPSVFQGTNGTSVITPLDPTA----QLR 1878
               .|| |..||: ||| |....|||          ..|....|     |..|..|||    :.|
  Fly  2750 ---SPGPSTAPGQVPGS-GPPLGPSP----------LPPHAVVG-----VAQPPPPTAHHDQRYR 2795

Human  1879 IMPLPAGGPSISQGLPASRYNTAADALAALVDAAASAPQMDVSK----------------TKESK 1927
            .:.|.....::.|...|.:.:..:..:||.||...   |||.:|                .::.:
  Fly  2796 DLTLHHHHHTLVQQQIAQQQHYRSLNVAAQVDMQR---QMDQAKRVMRHQQHQVQQQQQQQQQQQ 2857

Human  1928 HEAA-----RLEENLRSRSAAVSEQQQLEQKTLEVEK---------------------------- 1959
            |..|     .::|.:|.|......:::.||:..|.|:                            
  Fly  2858 HNHALERDREMQERMRERDREREREREREQRERERERERERERERERREQDRARRVVAEEREHDS 2922

Human  1960 RSVQCLYT------SSAFPSGKPQP----HSSVVYSEAGKDKGPPPKSRYEEELRTRGKTT---- 2010
            |.::.::.      |.....|.|.|    .:||  .|.|..:..|.:.|.....:..|...    
  Fly  2923 RRMERMFAGNVVTGSGGAGGGGPSPGQFLRASV--PETGPPRSIPDRERESYYRQAHGGPAPEDT 2985

Human  2011 ---ITAANFIDVIITRQIASDKDA-----RE-------------RGSQSSDSSSSLSSHRYETPS 2054
               ::|.:.||.||..:|....||     ||             |||.|...:.:.||     |:
  Fly  2986 PGQLSAQSLIDAIIKHEINRSNDATAGPGREFPRPSFVHAPLPPRGSGSGGGTGTRSS-----PA 3045

Human  2055 DAIEVI-----------------------SPASSPAPPQEKLQTYQPEVVKANQAENDPTRQYEG 2096
            :.:..:                       .|:||.:|....:...|..:..|..|.....:|.:.
  Fly  3046 NVLHPMYLRDLRQPLDGGAGSMLTAENNGKPSSSGSPSVINIDLDQERISAAAAAVAQQQQQQQA 3110

Human  2097 PLHHYRPQQESPSPQ---QQLPPSSQAEGMGQVP-RTH-RLITLADHICQIITQDFARNQVSSQT 2156
            |    .|.|.|.|..   |...|:|||.|....| :.| :.||..:....|||.|:..|      
  Fly  3111 P----PPSQSSQSRSVHGQLRTPTSQAGGSAPSPQQIHTKSITFGELTDSIITSDYGTN------ 3165

Human  2157 PQ-QPPTSTF-QNSPSALVSTPVRTKTSNRYSPESQAQSVHHQRPGSRVSPENLVDKSRGSRPGK 2219
            |. :||...: |.:.|.|  .|.|.| .||...:...::.||    |:...:....:...::..:
  Fly  3166 PHLRPPYMAYLQETQSIL--PPDRWK-QNRRMQQKAEEAKHH----SQQQQQQQHQQQHHAQQQQ 3223

Human  2220 SPERSHVSSEPYEPISPPQVPVVHEKQDSLLLLSQRGAEP--AEQRNDARSPGS----------- 2271
            ..::.|.:.:.:     ||:|.           :..|:.|  |.|...:..|||           
  Fly  3224 QQQQQHHAQQHH-----PQMPG-----------TGSGSAPGGAGQGGGSGGPGSGGGGAGRASTP 3272

Human  2272 ------ISYLPSFFTKLENTSPMVKSKKQEIFRKLNSSGGGDSDMAAAQPGTEIFNLPAVTTSGS 2330
                  |..:|      :..||...:.:..:...:.::|.|........|...:......|.||.
  Fly  3273 GEDGRNIIRMP------QAVSPRKFNHEMMLHHVMGTTGAGGEAGQFFLPSRVVLPEQRGTPSGG 3331

Human  2331 VSSRGHSFADPASNLG---LEDIIRKALMGSFDDKVEDHGVVMSQPMGVVPGTANTSVVTSGETR 2392
            ..:.|  ...|.|..|   :|..::..:           ..||...:|.   ..|.:|    |.|
  Fly  3332 GGAPG--AGGPGSGGGATTIEKYVKTRI-----------AEVMRDDIGY---GKNRTV----EVR 3376

Human  2393 REE---GDPSPHSGGVCKPKLISKSN----------SRKSKSPIPGQGYLGTERPSSVSSVHSEG 2444
            .|:   .|...||........::.:.          ..:||.|.|.:..:..:.|:....|.:.|
  Fly  3377 TEDEVTADMVAHSHAAVHAAHVAHAAHVAHAAAMELQHRSKEPPPPEISVSRKTPNQYEVVDASG 3441

Human  2445 DYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIAC--APSAVNQAAPHQQNRIWERE 2507
              .|.....:.....|...|...||:|.......||...|.:.  .|.|.....|||..::..:.
  Fly  3442 --RRSAGSGSVSVSVSGANSHHSPYHPPAAAYAPSTYAFPYSALNVPGAAGGLPPHQPLQLAHQA 3504

Human  2508 PAP 2510
            .||
  Fly  3505 VAP 3507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NCOR1XP_005256923.1 GPS2_interact 149..238 CDD:464868 32/123 (26%)
SANT 449..491 CDD:238096 28/41 (68%)
Myb_DNA-binding 637..680 CDD:459731 11/52 (21%)
PRK12323 <693..>867 CDD:481241 48/243 (20%)
SmrNP_001259491.1 GPS2_interact 708..>776 CDD:464868 20/67 (30%)
TPH <725..1020 CDD:464007 111/310 (36%)
Myb_DNA-binding 1009..1048 CDD:459731 25/38 (66%)
Atrophin-1 <2187..>2323 CDD:460830 34/157 (22%)

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