DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM39 and MAN1

DIOPT Version :9

Sequence 1:NP_909122.1 Gene:RBM39 / 9584 HGNCID:15923 Length:530 Species:Homo sapiens
Sequence 2:NP_001286812.1 Gene:MAN1 / 37838 FlyBaseID:FBgn0034962 Length:650 Species:Drosophila melanogaster


Alignment Length:94 Identity:22/94 - (23%)
Similarity:44/94 - (46%) Gaps:2/94 - (2%)


- Green bases have known domain annotations that are detailed below.


Human   423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 487
            |.|.::.:||:....::......|.:.:||:......:..:.:|..|.  .||::|.|...|...
  Fly   540 TPCLKIRHMFDSSEVDQANLKQSIVESIIEKVGTRCKICDVQLDVQSC--CVYIRCASEEDAGTI 602

Human   488 VNALHGRWFAGKMITAAYVPLPTYHNLFP 516
            ...::|.||..::|:..::.|..|.:.||
  Fly   603 HKEINGWWFDKRLISIKFLRLERYLSRFP 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM39NP_909122.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..146
SF-CC1 46..518 CDD:273721 22/94 (23%)
Interaction with JUN. /evidence=ECO:0000250|UniProtKB:Q8VH51 291..406
Activating domain. /evidence=ECO:0000250|UniProtKB:Q8VH51 291..355
Interaction with ESR1 and ESR2. /evidence=ECO:0000250|UniProtKB:Q8VH51 355..406
Interaction with NCOA6. /evidence=ECO:0000250|UniProtKB:Q8VH51 406..530 22/94 (23%)
MAN1NP_001286812.1 LEM 4..47 CDD:128813
MSC <381..509 CDD:286487
RRM_Man1 542..631 CDD:240732 19/90 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D873705at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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