DRSC/TRiP Functional Genomics Resources

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Protein Alignment SOX13 and Sox15

DIOPT Version :9

Sequence 1:NP_005677.2 Gene:SOX13 / 9580 HGNCID:11192 Length:622 Species:Homo sapiens
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:466 Identity:114/466 - (24%)
Similarity:170/466 - (36%) Gaps:165/466 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   288 EPS----QPLNLTAKPKAPELPNTSSSPSLKMSSCVPRPPSHGGPTRD----------------- 331
            |||    .|.:|.....:.:.|:.|.:|....|:.... |.|||...|                 
  Fly     2 EPSYDHEHPHHLLTNYNSKKYPHVSRTPEYSHSTGSDY-PEHGGYLTDGRLMHESNSDAGIYHVR 65

Human   332 --LQSSPPSLPLGFLGEGDAVTKAIQDARQLLHSHSGA--------------------------L 368
              .:.|.|||....:.......:.:.:|....||||.:                          |
  Fly    66 QGSEHSSPSLHSPAIQSSGYENEHLNEAVLAAHSHSHSPMPMVSSAYVGGGTASGSLINSNIPLL 130

Human   369 DGSPNTPFRKDLISLDSSP-------AKERLEDGCVH-PLEEA-MLSCDMDG----------SRH 414
            .|..|:...|.|    |.|       ...::||...| |:|.| |.|.|..|          .||
  Fly   131 GGGGNSVLNKFL----SHPHAGMVGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERH 191

Human   415 FP--------------ESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSM 465
            .|              :|...|.|:|||||||||||.||:|:....||:||:.:||:||.:|:|:
  Fly   192 KPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSL 256

Human   466 TNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVI 530
            |.|:::||.||..||...|:.::|:|||:||          |.:..:.:|:....::.:..|   
  Fly   257 TPQDRRPYVEEAERLRVIHMTEHPNYKYRPR----------RRKQSKLRAMQPGGKEQSESS--- 308

Human   531 PPQAGQVQMSSSDVLYPRAAGMPLA--------------------------------QPLVEHYV 563
             |..|.....|:    |:.|..|||                                |||...|.
  Fly   309 -PNPGTGGSKSN----PKLATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYS 368

Human   564 PRSLD------------------PNMPVIVNTCSLREEGEGTDDR------HSVADGEMYRYSED 604
            |.|:|                  |  |.::|..|  ..|.|.|:.      ...:.....:..::
  Fly   369 PSSVDCYSNADSTEQIESLAANCP--PALLNESS--PTGGGYDNSLLLKKLTKPSPSRAAKSRQE 429

Human   605 EDSEGEEKSDG 615
            :.::.|||:.|
  Fly   430 KLAKSEEKNKG 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SOX13NP_005677.2 SOX-TCF_HMG-box 423..494 CDD:238684 37/70 (53%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 37/70 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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