DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCARB2 and Snmp2

DIOPT Version :9

Sequence 1:NP_005497.1 Gene:SCARB2 / 950 HGNCID:1665 Length:478 Species:Homo sapiens
Sequence 2:NP_001163372.1 Gene:Snmp2 / 38868 FlyBaseID:FBgn0035815 Length:556 Species:Drosophila melanogaster


Alignment Length:545 Identity:143/545 - (26%)
Similarity:245/545 - (44%) Gaps:100/545 - (18%)


- Green bases have known domain annotations that are detailed below.


Human    16 LLVTSVTLLVA--------RVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNP 72
            |:|:::.:.||        .:|...|.:.:|:.:|:::|:|.|..:...|.|:..:.|.|||||.
  Fly     6 LIVSALGVCVAVLGGYCGWILFPNMVHKKVEQSVVIQDGSEQFKRFVNLPQPLNFKVYIFNVTNS 70

Human    73 EEILRGETPRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGDPKIDLIRTLN 137
            :.|.:|..|.|||:|||.|::.|.|....|..:|:.||.|.|..:.|:...|....:.|.|..||
  Fly    71 DRIQQGAIPIVEEIGPYVYKQFRQKKVKHFSRDGSKISYVQNVHFDFDAVASAPYTQDDRIVALN 135

Human   138 IPV---LTVIE--------------------WSQVHFLREIIE---------------------- 157
            :.:   |.|.|                    ...|..|:.::|                      
  Fly   136 MHMNAFLQVFEREITDIFQGFANRLNSRLNQTPGVRVLKRLMERIRGKRKSVLQISENDPGLALL 200

Human   158 -----AMLKAY---QQKLFVTHTVDELLW----------GYKDEILSLIHVF-------RPDISP 197
                 |.|||.   .:.:||:.:|.|.|:          |....|.:.|...       :.|.|.
  Fly   201 LVHLNANLKAVFNDPRSMFVSTSVREYLFDGVRFCINPQGIAKAICNQIKESGSKTIREKSDGSL 265

Human   198 YFGLFYEKNGTNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWI-------TDKCNMINGTDGDS 255
            .|..|..|||:....|...||:...:...:|.:.:...:|..|:       |..||.|||||..:
  Fly   266 AFSFFGHKNGSGHEVYEVHTGKGDPMRVLEIQKLDDSHNLQVWLNASSEGETSVCNQINGTDASA 330

Human   256 FHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIP--- 314
            :.|...:.:.:|:|.:|.||||.:.:......||:|.:||.:....:.:..   ||..||:.   
  Fly   331 YPPFRQRGDSMYIFSADICRSVQLFYQTDIQYQGIPGYRYSIGENFINDIGPEHDNECFCVDKLA 395

Human   315 -----EGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNQEDHETFVDINPLTG 374
                 :..||.:|.|:::.|.: ||:|::.||...|...:...|.|:.|:.:.|:||||:..|||
  Fly   396 NVIKRKNGCLYAGALDLTTCLD-APVILTLPHMLGASNEYRKMIRGLKPDAKKHQTFVDVQSLTG 459

Human   375 IILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKE-TASRLKSMINT--TLIIT 436
            ..|:..||.|.|:::|.::....|.::.|::.|.:::.|.:.::.| .|...|.:|||  ||.|.
  Fly   460 TPLQGGKRVQFNMFLKSINRIGITENLPTVLMPAIWVEEGIQLNGEMVAFFKKKLINTLKTLNIV 524

Human   437 NIPYIIMALGVFFGLVFTWLACKGQ 461
            :...:...:||....:..::..:|:
  Fly   525 HWATLCGGIGVAVACLIYYIYQRGR 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARB2NP_005497.1 CD36 28..455 CDD:307331 138/517 (27%)
Important for interaction with GBA 155..191 13/75 (17%)
Snmp2NP_001163372.1 CD36 10..543 CDD:395898 140/533 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148217
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
76.710

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