DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCARB2 and crq

DIOPT Version :9

Sequence 1:NP_005497.1 Gene:SCARB2 / 950 HGNCID:1665 Length:478 Species:Homo sapiens
Sequence 2:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster


Alignment Length:473 Identity:147/473 - (31%)
Similarity:241/473 - (50%) Gaps:46/473 - (9%)


- Green bases have known domain annotations that are detailed below.


Human     3 RCC--------FYTAGTLSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLP 59
            :||        .:..|::.|||     .:|:...:....|..:|..:.|:.||:|::||.:.|:|
  Fly     4 KCCGETQRKVWVFGLGSVFLLL-----GILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIP 63

Human    60 VYTQFYFFNVTNPEEILRGE-TPRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQ 123
            :|..||.||.||||:|...: .|...|:||||:.|...|.|..|.|| .|::....:.:.|:.::
  Fly    64 IYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTFLEKHKKENYTFYDN-ATVAYYERRTWFFDPER 127

Human   124 SVGDPKIDLIRTLNIPVLTVIE--WSQVHFLREIIEAMLKAYQQKLFVTHTVDELLW-GYKDEIL 185
            |.|... |::...:....||.:  ..|...:::||..||.....||:||..|.|.:: ||:|.|.
  Fly   128 SNGTLD-DMVTAAHAITATVADEMRDQRKIVKKIINFMLNHEGGKLYVTKPVGEWIFEGYQDNIT 191

Human   186 SLIHVF---RPDISPY--FGLFYEKNG--TNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITD 243
            ..:::|   :.|| ||  ||...::|.  |.||.:...||.|...|..::..||||:...:: ..
  Fly   192 DFLNLFNTTKIDI-PYKRFGWLADRNESLTYDGLFTIHTGTDDISNLGRLTHWNGKSETGFY-EM 254

Human   244 KCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYI-TFSDYESVQGLPAFRYKVPAEIL---AN 304
            .|.::|||.||.|.|.:..::.:.:|.:|.||.:.: ....||: .||.|.::....|.|   .|
  Fly   255 PCGIVNGTTGDMFPPKMNVNDEITIFATDACRFMNLRPRGTYEN-HGLTATKWVGTEETLDSGEN 318

Human   305 TSDNAGFCIPE--GNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNQEDHETFV 367
            ..:.|.||...  ..|..:||:....|::.|||..||||||.||:.:|.|:.||.|.:|.||.|:
  Fly   319 YPNQACFCDEARFDECPKTGVVECKACRDKAPIYSSFPHFYLADQSYVDAVSGMKPEKEKHEFFL 383

Human   368 DINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASRLKSMINTT 432
            .:.|:||:.::...|.|||:.::..|||.....::.::.|:.:.::...:..|.||:.|..||  
  Fly   384 AVEPITGVPVQVHGRIQINMMIEPDDDFDIYRGVQKVLMPMFWFDQYAELSSELASKAKLAIN-- 446

Human   433 LIITNIPYIIMALGVFFG 450
                     :.:.|:.||
  Fly   447 ---------LSSYGIIFG 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARB2NP_005497.1 CD36 28..455 CDD:307331 140/440 (32%)
Important for interaction with GBA 155..191 14/36 (39%)
crqNP_001245823.1 CD36 19..470 CDD:307331 145/458 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5605
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
87.880

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