DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOMER2 and homer1

DIOPT Version :10

Sequence 1:XP_006720838.1 Gene:HOMER2 / 9455 HGNCID:17513 Length:364 Species:Homo sapiens
Sequence 2:NP_001106603.1 Gene:homer1 / 100127824 XenbaseID:XB-GENE-5807410 Length:355 Species:Xenopus tropicalis


Alignment Length:349 Identity:185/349 - (53%)
Similarity:254/349 - (72%) Gaps:1/349 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    13 EQPIFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTF 77
            |||||:||||||||||||||||:|.||.|||||||||.|||.|||||:||:|.||||||:|||||
 Frog     3 EQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTISPNMTF 67

Human    78 TKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEKIETSSNHSQES- 141
            ||||||||||||||||||:|||||||..||||||||||.||||::||:|:|||:|.:|..|||| 
 Frog    68 TKTSQKFGQWADSRANTVYGLGFSSEHHLTKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESA 132

Human   142 GRETPSSTQASSVNGTDDEKASHAGPANTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNAR 206
            |.:..|.....|:||||||:.:.....|:..::|..:..:..|.|:|..|.||.||.||:.:||:
 Frog   133 GGDLQSPLTPESINGTDDERTTPDVTPNSEPRAEPTQNALPFTHSSAINKHWEAELATLKGNNAK 197

Human   207 LTTALQESAASVEQWKRQFSICRDENDRLRNKIDELEEQCSEINREKEKNTQLKRRIEELEAELR 271
            ||.||.||.|:|:|||:|.:..::|.:||..::.|||...::.|..:...|:|.::|:|||..|:
 Frog   198 LTAALLESTANVKQWKQQLAAYQEEAERLHKRVSELECLSNQANAVQSHKTELNQKIQELETTLK 262

Human   272 EKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKVEL 336
            :||.|::.|:::.|...:|..:.:.:|:||:..|..|:::|.::..|:..:|:|:..|...:..|
 Frog   263 KKEEEIERLKEEVEHAKELQDQKDSLSQKLQEVETHNKDMEGQLSDLEQRLEKSQNEQDAFRNNL 327

Human   337 KSFLEVLDGKIDDLHDFRRGLSKL 360
            |:.||:|||||.:|.:.|..|:||
 Frog   328 KTLLEILDGKIFELTELRDNLAKL 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOMER2XP_006720838.1 EVH1_Homer_Vesl 13..121 CDD:269917 93/107 (87%)
SMC_prok_B <103..343 CDD:274008 96/240 (40%)
homer1NP_001106603.1 EVH1_Homer_Vesl 3..111 CDD:269917 93/107 (87%)
SMC_prok_B <185..334 CDD:274008 53/148 (36%)

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