DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOMER3 and homer3

DIOPT Version :10

Sequence 1:NP_004829.3 Gene:HOMER3 / 9454 HGNCID:17514 Length:361 Species:Homo sapiens
Sequence 2:NP_001164991.1 Gene:homer3 / 779484 XenbaseID:XB-GENE-962123 Length:357 Species:Xenopus tropicalis


Alignment Length:358 Identity:234/358 - (65%)
Similarity:290/358 - (81%) Gaps:5/358 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     2 STAREQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVTP 66
            :|.|||||||||||||||||.||:||:||.|||:|||||||||||||||||:||.|||||||:||
 Frog     4 TTNREQPIFSTRAHVFQIDPITKKNWLPASKHAVTVSYFYDATRNVYRIISVGGTKAIINSTITP 68

Human    67 NMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGELTSPAL 131
            |||||||||||||||||||||||||||||||:|:|||||||||:||||||||:|||..:||:|||
 Frog    69 NMTFTKTSQKFGQWADSRANTVYGLGFASEQNLSQFAEKFQEVREAARLARERSQDKTDLTNPAL 133

Human   132 GLASHQVPPSPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQWEAEFFALQDSN 196
            .:.|.||.|||::||||||::||||||||:....|||||:|||||||||.|||||||||:|||:|
 Frog   134 NITSQQVLPSPIISANGPGDDKLFRSQSAEMELSTERERVKKMLSEGSVCEVQWEAEFFSLQDNN 198

Human   197 NKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPTGEKEGLGQGQSLEQLE 261
            |||..||||:||...:|::||.|.:.|||.|||||||||:|...|   |.|:.|......|:.||
 Frog   199 NKLVAALRESNANVEKWKKQLAAYQEEAETLRQRVAELESQTLKE---TNEEPGDELALRLKDLE 260

Human   262 ALVQTKDQEIQTLKSQTGGPREALEAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERE 326
            .|::||::||..||.|.....| || :||::..|::|:||.||.|:|.:|...|:||.::::||:
 Frog   261 TLLKTKEEEILLLKEQRPDLME-LE-SERDKLLQRLQELEERNQEMEKELERSEQSLRDSQSERD 323

Human   327 RARAEVGRAAQLLDVSLFELSELREGLARLAEA 359
            |.|.|:.:|.:.|||.:.:|:|||.||::|.|:
 Frog   324 RVREEISKAGEDLDVKICQLNELRIGLSKLLES 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOMER3NP_004829.3 Required for interaction with NFATC2. /evidence=ECO:0000269|PubMed:18218901 1..80 67/77 (87%)
EVH1_Homer_Vesl 6..114 CDD:269917 96/107 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..169 35/54 (65%)
Smc <166..>360 CDD:440809 102/194 (53%)
homer3NP_001164991.1 EVH1_Homer_Vesl 8..116 CDD:269917 96/107 (90%)
SMC_prok_B <153..>347 CDD:274008 104/198 (53%)

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