DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOMER3 and homer3b

DIOPT Version :10

Sequence 1:NP_004829.3 Gene:HOMER3 / 9454 HGNCID:17514 Length:361 Species:Homo sapiens
Sequence 2:NP_957407.1 Gene:homer3b / 394088 ZFINID:ZDB-GENE-040426-739 Length:360 Species:Danio rerio


Alignment Length:362 Identity:198/362 - (54%)
Similarity:270/362 - (74%) Gaps:14/362 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVTPNMTF 70
            |||:||.:|||||||||||||||||.|||:|||:|:||.|:||||||:||.|||||||:||||||
Zfish     3 EQPLFSVKAHVFQIDPATKRNWIPASKHAVTVSFFFDAGRSVYRIISVGGTKAIINSTITPNMTF 67

Human    71 TKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGELTSPALGLAS 135
            |||||||||||||||||||||||::||.|.||:|:|:|.||||||.|:|||:..||.||.|.:::
Zfish    68 TKTSQKFGQWADSRANTVYGLGFSTEQQLQQFSEQFKEFKEAARLVRDKSQEKFELLSPGLNISA 132

Human   136 HQVPPS--------PLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQWEAEFFAL 192
            .|:|.:        ||:..||..|:|||||:|||....||:|:::|||||||:.|:..|||.|:|
Zfish   133 PQLPQALSVDRQSPPLLGVNGSSEDKLFRSKSADMEQTTEKEQMRKMLSEGSICEINSEAELFSL 197

Human   193 QDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQA-ASEVTPTGEKEGLGQGQS 256
            :|||.||..||.:||::..||::||...:.|.||||::|||||||: .|..:..|.:|   ..||
Zfish   198 RDSNTKLVAALHDANSSIEQWKKQLAEYQEETERLREQVAELEAQSGVSAFSEMGNEE---LTQS 259

Human   257 LEQLEALVQTKDQEIQTLKSQTGGPREALEAAEREETQQKVQDLETRNAELEHQLRAMERSLEEA 321
            :.::|||::.||:||:.|::......| || .|::|..|::||||.:|:|||.|:...|.:|..:
Zfish   260 IAEMEALIKAKDEEIKVLRNNKPDFSE-LE-KEKQEASQRMQDLEAKNSELEKQVETAENALASS 322

Human   322 RAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 358
            :..:.||...|.:|.:.|||.:::|::||:.||:|.:
Zfish   323 KEAQSRAETAVQKAIETLDVKIYDLNDLRQNLAKLLD 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOMER3NP_004829.3 Required for interaction with NFATC2. /evidence=ECO:0000269|PubMed:18218901 1..80 61/73 (84%)
EVH1_Homer_Vesl 6..114 CDD:269917 87/107 (81%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..169 28/62 (45%)
Smc <166..>360 CDD:440809 84/194 (43%)
homer3bNP_957407.1 EVH1_Homer_Vesl 3..111 CDD:269917 87/107 (81%)
Smc <191..>360 CDD:440809 73/174 (42%)

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