DRSC/TRiP Functional Genomics Resources

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Protein Alignment CD33 and meis1

DIOPT Version :9

Sequence 1:XP_011525833.1 Gene:CD33 / 945 HGNCID:1659 Length:418 Species:Homo sapiens
Sequence 2:XP_002931792.1 Gene:meis1 / 100488182 XenbaseID:XB-GENE-479439 Length:465 Species:Xenopus tropicalis


Alignment Length:157 Identity:31/157 - (19%)
Similarity:50/157 - (31%) Gaps:45/157 - (28%)


- Green bases have known domain annotations that are detailed below.


Human    99 HPIPYYDKNSPVH----------GYWFREGAIISRDSPVATNKLDQEVQEETQGR-FRLLGDPSR 152
            ||.|..::...:.          ..||     |:....:....:||..:..:||. :...|.|..
 Frog   297 HPYPSEEQKKQLAQDTGLTILQVNNWF-----INARRRIVQPMIDQSNRAVSQGTPYNADGQPMG 356

Human   153 NNCSLSIVDARRRDN----------GSYF-----FRMERGSTKYSYKSPQLSVHVTDLTHRPKIL 202
            .    .::|.::...          |||.     ..|..|..  ||.:.|:.:|...|.|...: 
 Frog   357 G----FVMDGQQHMGIRAPGLQGMPGSYISPSGPMGMSMGQP--SYTTSQMPLHHAQLRHGTSV- 414

Human   203 IPGTLEPGHSKNLTCSVSWACEQGTPP 229
              .|..|||..:....:     .|.||
 Frog   415 --HTYIPGHHHHPAMMM-----HGGPP 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CD33XP_011525833.1 Ig 77..193 CDD:299845 22/119 (18%)
IG_like 80..182 CDD:214653 18/108 (17%)
ig 200..281 CDD:278476 7/30 (23%)
meis1XP_002931792.1 Meis_PKNOX_N 108..192 CDD:374576
Homeobox_KN 290..329 CDD:368670 6/36 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 73 1.000 Domainoid score I35468
eggNOG 1 0.900 - - E1_2CYFK
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm54708
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X34
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.860

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