DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LPXN and Pax

DIOPT Version :9

Sequence 1:NP_001137467.1 Gene:LPXN / 9404 HGNCID:14061 Length:391 Species:Homo sapiens
Sequence 2:NP_001033913.1 Gene:Pax / 35215 FlyBaseID:FBgn0041789 Length:581 Species:Drosophila melanogaster


Alignment Length:429 Identity:192/429 - (44%)
Similarity:257/429 - (59%) Gaps:62/429 - (14%)


- Green bases have known domain annotations that are detailed below.


Human     8 SSDALLEELERS---TLQDSDEYSNPAPLPLDQH---SRKETNLDETSEILSIQDNTSPLPAQLV 66
            |.|:||:||:.:   .:.:...:.:|.|   .:|   :.:||.    :|.|:..|.    |...|
  Fly   167 SVDSLLKELDNAHIYAVPNGSAHKSPTP---GRHVTITVRETK----TEKLTGPDG----PVGTV 220

Human    67 YTTNIQELNVYSEAQEPKESPPPSK------TSAAAQLDELMAHLTEMQAKVAVRADAGKKH--- 122
            ....:|:.:.|:    |..:.|..:      :.|..:||:|||.|::.:............|   
  Fly   221 EEQIVQQKDSYT----PNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIGNGSHPQQ 281

Human   123 --------------LPDKQDHKA------------------SLDSMLGGLEQELQDLGIATVPKG 155
                          .|:|...:|                  .||||||.|:..:...|:.||.||
  Fly   282 HSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKG 346

Human   156 HCASCQKPIAGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFERSGLAYCPNDYHQLFSPRCAYCA 220
            .|.:|:|||.|:||.|||::||||||.|.||.:|:|:..||||.|..||..|||.|||||||||.
  Fly   347 CCNACEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCN 411

Human   221 APILDKVLTAMNQTWHPEHFFCSHCGEVFGAEGFHEKDKKPYCRKDFLAMFSPKCGGCNRPVLEN 285
            ..||||.:||:::|||.|||||:.||:.||.|||||:|.|||||.|:..||:|||.||||.::||
  Fly   412 GAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIMEN 476

Human   286 YLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGTLCHGCGQPITGRCISAMG 350
            |:||:::.|||:||||.||...|..||||:.:|.|:||.|||.:||:||.||.:|||||||:||.
  Fly   477 YISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCSKPITGRCITAMF 541

Human   351 YKFHPEHFVCAFCLTQLSKGIFREQNDKTYCQPCFNKLF 389
            .|||||||||||||.||:||.|:||.||.||..||:|:|
  Fly   542 KKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHTCFDKIF 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPXNNP_001137467.1 LIM1_Leupaxin 155..209 CDD:188790 31/53 (58%)
LIM2_Leupaxin 216..267 CDD:188792 33/50 (66%)
LIM3_Leupaxin 275..327 CDD:188794 29/51 (57%)
LIM4_Paxillin_like 334..385 CDD:188725 36/50 (72%)
PaxNP_001033913.1 LIM1_Paxillin_like 348..400 CDD:259830 30/51 (59%)
LIM2_Paxillin_like 407..458 CDD:188723 33/50 (66%)
LIM3_Paxillin_like 466..518 CDD:188724 29/51 (57%)
LIM4_Paxillin 525..576 CDD:188795 36/50 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165149726
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.810

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