DRSC/TRiP Functional Genomics Resources

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Protein Alignment LHX2 and esn

DIOPT Version :9

Sequence 1:NP_004780.3 Gene:LHX2 / 9355 HGNCID:6594 Length:406 Species:Homo sapiens
Sequence 2:NP_001260760.1 Gene:esn / 53557 FlyBaseID:FBgn0263934 Length:1134 Species:Drosophila melanogaster


Alignment Length:464 Identity:100/464 - (21%)
Similarity:146/464 - (31%) Gaps:130/464 - (28%)


- Green bases have known domain annotations that are detailed below.


Human     2 LFHSLSGPE-----VHGVIDEMDRRAK-SEAPAISSAIDRGDTETTMPSISSDRAALCAGC---- 56
            |.|.|...:     .|.:.||..:..: ..|.....|:.||    .:..:|.:|.  |.||    
  Fly   542 LLHQLPPQDNEVRYCHSLSDEERKELRIFSAQRKREALGRG----AVRLLSDERP--CKGCEEPL 600

Human    57 -GGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL 120
             ||.|......|.....||..|..|..|| .|..:|..|.:||::||.. ::......||:.|. 
  Fly   601 SGGDIVVFAQRLGAQLCWHPGCFVCSVCK-ELLVDLIYFQRDGNLYCGR-HHAETQKPRCSACD- 662

Human   121 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALL------------ 173
            .|..|:....|....:|:..|.|..|...| .|..:.|::...||...|:.:.            
  Fly   663 EIIFSDECTEAEGRTWHMKHFACQECEHQL-GGQRYIMREGKPYCLACFDTMFAEYCDYCGEVIG 726

Human   174 --QGEYP---AHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTV------QKGRPRK 227
              ||:..   .|::..|...:......:.           ||.|:....||:      .||.|..
  Fly   727 VDQGQMSHDGQHWHATDQCFSCCTCRCSL-----------LGRPFLPRRGTIYCSIACSKGEPPT 780

Human   228 RKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
            ......|..|...:.|.:                |||..|..|...:..:....|::   :.:|.
  Fly   781 PSDTSSGPQLRPTHRAST----------------SSQIAKSPRRGGERERDPGRKAH---HGHPK 826

Human   293 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGV------------------------ 333
            |         ||....:|:          |:...|.|..||                        
  Fly   827 A---------TGSAGDLLE----------RQERQRMEAAGVADLLLGGGVPGMPRPAHPPPIDLT 872

Human   334 ------------DKSTDAALQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVP 386
                        |||.....||.|.|.|...||.|..|.|.......:|.||:...:|.....:.
  Fly   873 ELGISLDNICAGDKSIFGDTQTLTNSMPDMLLSKADDSHSYQSIDKINLNSPSNSDLTQSTQELA 937

Human   387 GNLE-GHEP 394
            ..|| .:||
  Fly   938 NELELDNEP 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LHX2NP_004780.3 LIM1_Lhx2 43..106 CDD:188853 22/67 (33%)
LIM2_Lhx2_Lhx9 111..169 CDD:188763 15/57 (26%)
COG5576 <247..378 CDD:227863 32/166 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 250..270 4/19 (21%)
Homeobox 270..323 CDD:395001 7/52 (13%)
Nuclear localization signal. /evidence=ECO:0000255 307..323 1/15 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..374 18/81 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..406 4/9 (44%)
esnNP_001260760.1 PET_Prickle 492..588 CDD:193602 10/49 (20%)
LIM1_Prickle 593..651 CDD:188799 20/59 (34%)
LIM2_Prickle 656..711 CDD:188802 15/56 (27%)
LIM3_Prickle 716..774 CDD:188804 9/68 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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