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Protein Alignment LHX2 and Vsx1

DIOPT Version :9

Sequence 1:	NP_004780.3	Gene:	LHX2 / 9355	HGNCID:	6594	Length:	406	Species:	Homo sapiens
Sequence 2:	NP_001284898.1	Gene:	Vsx1 / 31470	FlyBaseID:	FBgn0263511	Length:	837	Species:	Drosophila melanogaster

Alignment Length:	298	Identity:	79/298 - (26%)
Similarity:	105/298 - (35%)	Gaps:	108/298 - (36%)

- Green bases have known domain annotations that are detailed below.

Human   168 HFEALLQGEYPAHFNHADV-----------AAAAAAAAAAKS----AGLGA---AGANPLGLPYY 214
            |..|.....:.||..||..           ||.||.||.|.:    |.|||   ||.||..|...
  Fly   309 HHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAA 373

Human   215 NGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRM--RTSFKHHQ 277
            :| |.|..|    ....|||                           ..:|.||.  ||.|...|
  Fly   374 HG-GDVLVG----PGGTGPG---------------------------GKKKNKRRHGRTIFTSSQ 406

Human   278 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN------------------ 324
            |..::..|...|.||....:.|:.||||.:..:|||:||.|||:|:.
  Fly   407 LEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGA 471

Human   325 LLR-------------QENTGV--------DKSTDAA-LQTGTPSG---PASELSNASLSPSSTP 364
            ::|             :|:..|        .||.:|| |.....|.   |.|:.:|.|.|..||.
  Fly   472 MVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTH 536

Human   365 TTLTDLTSPTLP-TVTSVLTSVP----GNL--EGHEPH 395
                  .||... :::.:|...|    |:.  :||..|
  Fly   537 ------NSPISSFSISRLLFDAPPPAAGSAGGKGHHHH 568

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.