DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNOT8 and Pop2

DIOPT Version :10

Sequence 1:NP_004770.4 Gene:CNOT8 / 9337 HGNCID:9207 Length:292 Species:Homo sapiens
Sequence 2:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster


Alignment Length:253 Identity:172/253 - (67%)
Similarity:213/253 - (84%) Gaps:9/253 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     1 MPAA--------LVENSQV-ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRS 56
            ||:|        :..|.:. |.:||..|||||.|.||::|..|.|:||||||||||.||:|||||
  Fly     5 MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRS 69

Human    57 SIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGL 121
            :.||.|||||||||||:||||||||.::.|:.|.|.:||||||||||:||||:|||||||.|||:
  Fly    70 TADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGI 134

Human   122 QFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
            ||:||||:|||.:.||||||:||:||.:|:|||.|||||||||::|||||..||.:|.|||.:|:
  Fly   135 QFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLH 199

Human   187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKEL 244
            ::||:|:|:|||||||||||||||||||||:|:|:|.|||||||:||||||||:|:|:
  Fly   200 IYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREV 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNOT8NP_004770.4 CAF1 1..263 CDD:474062 172/253 (68%)
Pop2NP_001287041.1 CAF1 25..257 CDD:474062 167/231 (72%)

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