DRSC/TRiP Functional Genomics Resources

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Protein Alignment GPR52 and DopEcR

DIOPT Version :9

Sequence 1:NP_005675.3 Gene:GPR52 / 9293 HGNCID:4508 Length:361 Species:Homo sapiens
Sequence 2:NP_001014559.1 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster


Alignment Length:306 Identity:79/306 - (25%)
Similarity:142/306 - (46%) Gaps:28/306 - (9%)


- Green bases have known domain annotations that are detailed below.


Human    35 SVVDVCIFETVVIVLLTFLIIAGNLTVIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTL 99
            |::.|.|..:.::::.|:....|...||              :|::.::|.|||..|:  ||...
  Fly    23 SILGVAIVLSNLLIIATYANFKGPTEVI--------------NYYLLSLAIADLLCGL--LVVPF 71

Human   100 SLLHYSTG--VHESLTCQVFGYIISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICI 162
            |:....||  ::..:.|:..||:...|.:||:.....||||||||:.|||.|..:.|..|.:..:
  Fly    72 SVYPALTGEWMYGDIVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKTRCQCWM 136

Human   163 ILIWIYSCLIFLPSFFGWGKPGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIF 227
            :..||.:.|:..|...|:..| ...::...|...|...|.::..:..|:..|:...:...|.:||
  Fly   137 VFTWISAALLCCPPILGYSMP-IENNMTHICMLDWGNMAAYSATLAILVLGPSLISIVHNYGYIF 200

Human   228 KICRQHTKEINDRRARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLE--SS 290
            .:.|:       .|:..|.|:.:.:.....:......|:.|.:...|::.|||:|:..|.|  :.
  Fly   201 VMMRK-------IRSGEPIHDKEYATALAENLSNPSHMMSFALVFAFWVSWLPWILLRLYEVVTG 258

Human   291 RVLDNPTLSFLTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMC 336
            .|:.:..::|...|:.|.|||...:|.:..:..||:.||....|:|
  Fly   259 DVIQSTLINFAVVWIGILNSFWKILIMTSMSPQFRIALRVFCLTIC 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GPR52NP_005675.3 7tm_classA_rhodopsin-like 43..321 CDD:410626 70/281 (25%)
TM helix 1 43..67 CDD:410626 4/23 (17%)
TM helix 2 77..99 CDD:410626 8/21 (38%)
TM helix 3 115..137 CDD:410626 6/21 (29%)
TM helix 4 160..176 CDD:410626 3/15 (20%)
TM helix 5 201..224 CDD:410626 3/22 (14%)
TM helix 6 264..286 CDD:410626 7/21 (33%)
TM helix 7 296..321 CDD:410626 7/24 (29%)
DopEcRNP_001014559.1 7tm_classA_rhodopsin-like 18..289 CDD:410626 73/289 (25%)
TM helix 1 18..42 CDD:410626 4/18 (22%)
TM helix 2 51..73 CDD:410626 8/23 (35%)
TM helix 3 89..111 CDD:410626 6/21 (29%)
TM helix 4 134..150 CDD:410626 3/15 (20%)
TM helix 5 174..197 CDD:410626 3/22 (14%)
TM helix 6 230..252 CDD:410626 7/21 (33%)
TM helix 7 264..289 CDD:410626 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 101 1.000 Domainoid score I6937
eggNOG 1 0.900 - - E33208_3BK8J
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74561
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1099557at2759
OrthoFinder 1 1.000 - - FOG0003993
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5013
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
76.820

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