DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAB11B and Rab18

DIOPT Version :10

Sequence 1:NP_004209.2 Gene:RAB11B / 9230 HGNCID:9761 Length:218 Species:Homo sapiens
Sequence 2:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster


Alignment Length:165 Identity:74/165 - (44%)
Similarity:109/165 - (66%) Gaps:3/165 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 73
            |...|:::||:||||||:|:.||..|:|:.....|||::|.::.:||||...|..:|||||.||:
  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67

Human    74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIMLVGNKSDLRHLRAVPTD 137
            |::|.::||.|:||:|||||....:...:|.||.||..::|: ||.|::||||.|  ..|.|..:
  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130

Human   138 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172
            |.|.||.|:...||||||.....|.:.||:::.:|
  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKI 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB11BNP_004209.2 Rab11_like 9..173 CDD:206660 74/165 (45%)
Switch 1. /evidence=ECO:0000305|PubMed:16545962, ECO:0007744|PDB:2F9L, ECO:0007744|PDB:2F9M 36..47 4/10 (40%)
Switch 2. /evidence=ECO:0000305|PubMed:16545962, ECO:0007744|PDB:2F9L, ECO:0007744|PDB:2F9M 67..86 10/18 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..218
Rab18NP_524744.2 Rab18 6..165 CDD:206656 72/160 (45%)
Blue background indicates that the domain is not in the aligned region.

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