DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDHR1 and cdh-1

DIOPT Version :10

Sequence 1:XP_011538639.1 Gene:CDHR1 / 92211 HGNCID:14550 Length:917 Species:Homo sapiens
Sequence 2:NP_497641.2 Gene:cdh-1 / 187783 WormBaseID:WBGene00019994 Length:2779 Species:Caenorhabditis elegans


Alignment Length:803 Identity:190/803 - (23%)
Similarity:328/803 - (40%) Gaps:131/803 - (16%)


- Green bases have known domain annotations that are detailed below.


Human    24 APQWGPS-VHLGWG---GGAPSCPVAGPDAGPRWCEAPSWCLGVLCLGVRLFCVLFPAQANFAPH 84
            ||||..| :|:...   ||:.:.....||.|..     .| :....|...|..:.......|.|:
 Worm   438 APQWHSSQIHISLNRTQGGSRTLTAKDPDLGQN-----GW-IRYSVLDTELVSIDKETGRIFVPN 496

Human    85 FFDNGVGS---------TNGNMAL--------------------------FSLPEDTPVGS---H 111
            ..|..:||         ..|:.||                          ..:|||||:|:   .
 Worm   497 TIDCNIGSEIKFRVRAEDGGSPALSTDLQVVADLLDTESKPPQFEKALWQVEIPEDTPIGTCLVK 561

Human   112 VYTLNGTDPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDREREDEIE-AIISISDGLNLV 175
            |...|........|.|.:.   :.....:||...|.:.:.:..|.|::...: .:|:.:......
 Worm   562 VVANNSQCGNSKRIRYSLQ---NQDEHLTVDTMSGTVCIQKTFDFEKQKSYQTTVIATNANSETS 623

Human   176 AEKVVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAVDRDTGSGGSVTYFLQNLHSPFA 240
            ...:.|.:.|.||..|.|....|...|.|.......:..|.|.|.|:|:.|.|:|.:.:..|.|:
 Worm   624 TSLISIRLKDVNDNWPIFYPNEYHLTVREGPKPEEPLLVVSASDMDSGTFGEVSYHILSESSSFS 688

Human   241 VDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTVTVNVEDVQDMAPVFV 305
            ::..:|    :..|.....|.|.| :.|.||||||:..      ..:..:.:.|.|.....|.|.
 Worm   689 INPVTG----EVFAQKPLARGRFH-LVVSAKDGGGQSS------ENSANIHITVIDKDTKTPQFS 742

Human   306 GTPYYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGN-DGAFEINETSGAISITQSPAQL 369
            .:.|.....||.|||..:       |..|..:::.||:.:|: |..|.|:|.:|.|.:|:   .|
 Worm   743 RSKYEIRTTEDILPGIAI-------GSVGAMSKVKYSIYSGDQDHNFSIDEDTGKIYVTR---YL 797

Human   370 QREVYE---LHVQVTEMSPAGSPAAQATVPVTIRIVDLNNHPPTFYGESGPQNRFELSMNE---- 427
            ..:|::   |::|.|  .|:|.   .....|.|.|.|.|::||.|     ..:..|:|:.|    
 Worm   798 DADVHDTVLLNIQAT--LPSGE---SNQTQVVIFIEDHNDNPPQF-----SSSLVEISIREDLKL 852

Human   428 HPPQGEILRGLKITVNDSDQGANAKFNLQLVGPRGIFRVVPQTVLNEAQVTIIVENSAAIDFEKS 492
            |.|      ...:..:|.|:..|.:....::...      |.:.:...|.|..:...:.:|:|.:
 Worm   853 HEP------FYVVQASDKDKKKNGEVRYSIISSH------PGSSIEIDQFTGQLSTGSLLDYEAT 905

Human   493 KVLTFKLLAVEVNTPEKFSSTADVVIQLLDTNDNVPKFDSLYYVARIPENAPGGSSVVAVTAVDP 557
            :....::.|.::..|.: ||...:.|.:||.|||.|:|:..:|...:.||:|..:.|..|.|.|.
 Worm   906 RNYKLRVKATDLGIPPR-SSNMTLFIHVLDVNDNAPEFEKSWYTMEVLENSPPKTIVGKVVARDK 969

Human   558 DTGPWGEVKYSTYGTGADLFLIHPSTGLIYTQPWASLDAEATARYNFYVKAED--MEGKYSVAEV 620
            |:...|::.| ....|::.|.|....|.:||:  .|:|.|..:..:..:.|||  :..:.|.|..
 Worm   970 DSLENGQIVY-RITNGSEYFGIDEKLGNVYTK--RSIDREVISHVDISIVAEDKGVPPRSSTASA 1031

Human   621 FITLLDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDAEEPNNLVDYSITHAE--PANVFDINSH 683
            .|::|||||:||.. .|:....:..|:|:........|.:|:..::.|:.:..  .:::|.:.|:
 Worm  1032 RISVLDVNDNPPSC-LSITPIVVPAGSPLSTAIGTIVAMDPDKGLNGSVLYRAQLQSSLFVVKSN 1095

Human   684 TGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKDRGSPSFSTTALLKIDIT--DAETLSRSPMA 746
             |:::|:..:.:.|..|.         .|.|...|:|.|..|....:.:.|:  .|:...:.|..
 Worm  1096 -GDVYLRRQLNASDERHQ---------RLSVIVSDQGVPRKSVVCHVPVRISKGSADIQIQEPFQ 1150

Human   747 AFLIQTKDNP-------MKAVGV 762
            .::...|..|       :.|.||
 Worm  1151 KYIEIPKSCPTGCRLTTLNATGV 1173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDHR1XP_011538639.1 Cadherin_repeat 100..188 CDD:206637 18/91 (20%)
Cadherin_repeat 197..299 CDD:206637 27/101 (27%)
Cadherin_repeat 308..407 CDD:206637 30/102 (29%)
Cadherin_repeat 421..526 CDD:206637 21/108 (19%)
Cadherin_repeat 535..630 CDD:206637 30/96 (31%)
Cadherin_repeat 646..737 CDD:206637 18/94 (19%)
cdh-1NP_497641.2 Cadherin_repeat 29..118 CDD:206637
Cadherin_repeat 129..229 CDD:206637
Cadherin_repeat 238..328 CDD:206637
Cadherin_repeat 459..532 CDD:206637 14/78 (18%)
Cadherin_repeat 546..637 CDD:206637 19/93 (20%)
Cadherin_repeat 645..733 CDD:206637 26/98 (27%)
Cadherin_repeat 746..833 CDD:206637 30/101 (30%)
Cadherin_repeat 843..938 CDD:206637 21/107 (20%)
Cadherin_repeat 947..1041 CDD:206637 30/96 (31%)
Cadherin_repeat 1051..1136 CDD:206637 17/94 (18%)
Cadherin_repeat 1337..1426 CDD:206637
Cadherin_repeat 1445..>1515 CDD:206637
Cadherin_repeat 1638..1723 CDD:206637
Cadherin_repeat 1734..1817 CDD:206637
Cadherin_repeat 1836..1923 CDD:206637
Cadherin_repeat 1934..2025 CDD:206637
Cadherin_repeat 2034..2120 CDD:206637
Cadherin_repeat 2135..2226 CDD:206637
Cadherin_repeat 2235..2330 CDD:206637
Cadherin_repeat 2345..2437 CDD:206637
Cadherin_repeat 2446..2534 CDD:206637
Blue background indicates that the domain is not in the aligned region.

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