DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment OSMR and Dscam1

DIOPT Version :9

Sequence 1:NP_001310435.1 Gene:OSMR / 9180 HGNCID:8507 Length:980 Species:Homo sapiens
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:1011 Identity:199/1011 - (19%)
Similarity:317/1011 - (31%) Gaps:354/1011 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    77 SNVIWVGNYSTTVKWNQVLHWSWE---------SELPLECATHFVRIKSLVDDAKFPEPNFWSNW 132
            ||......||..:..|....|..|         |:..:||...           .||:|..    
  Fly   704 SNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKAD-----------GFPKPQV---- 753

Human   133 SSWEEVSVQDSTGQ--DILFVFPKDKL-VEEGTNVTICYVSRNIQNNVSCYLEGKQIHGEQLDPH 194
             :|:: :|.|:.|:  |:.   ..|.: |||||    .:|....:.|...||             
  Fly   754 -TWKK-AVGDTPGEYKDLK---KSDNIRVEEGT----LHVDNIQKTNEGYYL------------- 796

Human   195 VTAFNLNSVPFIRNKGTNIYCEASQGNVSEGMKGIVL--------FVSKVLE------EPKDFSC 245
                                |||..| :..|:..:::        |..|:..      ||....|
  Fly   797 --------------------CEAING-IGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQC 840

Human   246 ETEDFKTLHCTW-------DPGTDTALGWSKQPSQSYTLFESF--SGEKKLCTHKNWCNWQITQD 301
            |.:..|.:...|       ||..|          ..||:.|..  :|.....:.|.      |:.
  Fly   841 EAKGEKPIGILWNMNNMRLDPKND----------NRYTIREEILSTGVMSSLSIKR------TER 889

Human   302 SQETYNFTLIAENYLRK--RSVNILFNLTHRVYLMNPFSVNFENVNATNAIMTWKVHSIRNNFTY 364
            |.... ||.:|.|....  .|:|::......:    |:::...:.:..:..::|           
  Fly   890 SDSAL-FTCVATNAFGSDDASINMIVQEVPEM----PYALKVLDKSGRSVQLSW----------- 938

Human   365 LCQIELHGEGKMMQQYNVSIK-------------VNG---EYFLSELEPATEYMARVRCADASHF 413
               .:.:.....:.:|.:..|             |.|   |..:.:|.|||.|..|:...:|...
  Fly   939 ---AQPYDGNSPLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGT 1000

Human   414 WKWSEWSGQNFTTLEAAPSEAPDVWRIVSLEPGNH-TVTLFWKPLSKLHANGKILFYNVVVENLD 477
            .:.||  .....|.|.|||..|   :.:.:||.|. |:.:.|||..:...||:||.|.|..: |.
  Fly  1001 SQSSE--AVTIITAEEAPSGKP---QNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYK-LS 1059

Human   478 KPSSS----ELHSIPAPANSTKLILDR----CSYQICVIANNSVGASPASVIVISADPENKEVEE 534
            ..:||    .::.|........|.|..    ..|.:.:.|.|.:||.|.|             ||
  Fly  1060 NTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLS-------------EE 1111

Human   535 ERIAGTEGGFS-----------------LSWKPQP-----GDVIGYVV------DWCDHTQDVLG 571
            |:....||..|                 :.|...|     |.:..|.|      :|.|.|:.   
  Fly  1112 EKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKR--- 1173

Human   572 DFQWKNVG------------PNTTSTVISTDAFRPGVRYDFRIYGLSTKRIACLLEKKTGYSQEL 624
              .:|...            .|.|..|::|.|...|||         :..|.|..|...    ..
  Fly  1174 --HYKKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVR---------SVPIHCQTEPDV----PE 1223

Human   625 APSDNPHVLVDTLTSHSFTLSWKDYSTESQP-GFIQGYHVYLKSKARQCHPRFEKAVLSDGSECC 688
            ||:|   |....:.:.:..:||:   ..:|| |.|..|.||.|::..:...:.:|..        
  Fly  1224 APTD---VKALVMGNAAILVSWR---PPAQPNGIITQYTVYSKAEGAETETKTQKVP-------- 1274

Human   689 KYKIDNPEEKALIVDNLKPESFYEFFITPFTSAGEGPSA--------------------TFTKVT 733
            .|::   ..:|..::..||   |||::|..|:.|||..:                    |||...
  Fly  1275 HYQM---SFEATELEKNKP---YEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATF 1333

Human   734 TPDEHSSMLIHILLPMVFCVLLIMVMCYLKSQWIKETCYPDIPDPYKSSILSLIKFKENPH---- 794
            ..|..        :|   |:.:                  ..|.|..:..:..::|..|..    
  Fly  1334 KEDAK--------MP---CLAV------------------GAPQPEITWKIKGVEFSANDRMRVL 1369

Human   795 ----LIIMNVS-----------------DCIPDAIEVVSKPEGTKIQFLGTRKSLTETELTKPNY 838
                |:|.:|:                 |.|...:.|::.|:...:....|.......:|     
  Fly  1370 PDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKL----- 1429

Human   839 LYLLPTEKNHSGPGPCICFENLTYNQAASDSGSCGHVPVSPKAPSMLGLMTSPENVLKALEKNYM 903
                   |.|.|....:....|.|.....: .....|.|..:..::.||:......:      |.
  Fly  1430 -------KPHEGDTAPLHGYTLHYKPEFGE-WETSEVSVDSQKHNIEGLLCGSRYQV------YA 1480

Human   904 NSLGEIPAGETS--LNYVSQLASPMFGDKDSLPTNP 937
            .....|.|||.|  ||..::      |.|..||..|
  Fly  1481 TGFNNIGAGEASDILNTRTK------GQKPKLPEKP 1510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OSMRNP_001310435.1 FN3 233..>288 CDD:304408 14/69 (20%)
FN3 335..407 CDD:214495 13/87 (15%)
WSXWS motif 416..420 2/3 (67%)
FN3 446..522 CDD:238020 24/84 (29%)
fn3 540..608 CDD:278470 20/107 (19%)
FN3 626..734 CDD:238020 29/128 (23%)
Box 1 motif 771..779 1/7 (14%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 3/9 (33%)
IGc2 735..804 CDD:197706 25/126 (20%)
I-set 819..914 CDD:254352 24/111 (22%)
Ig 833..921 CDD:299845 22/108 (20%)
FN3 918..1011 CDD:238020 16/112 (14%)
FN3 1018..1116 CDD:238020 30/114 (26%)
FN3 1124..1217 CDD:238020 19/106 (18%)
FN3 1222..1312 CDD:238020 27/109 (25%)
Ig 1339..1406 CDD:299845 11/87 (13%)
FN3 1409..1499 CDD:238020 20/108 (19%)
FN3 1504..1584 CDD:238020 3/7 (43%)
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.