DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNQ4 and kqt-1

DIOPT Version :9

Sequence 1:NP_004691.2 Gene:KCNQ4 / 9132 HGNCID:6298 Length:695 Species:Homo sapiens
Sequence 2:NP_741819.1 Gene:kqt-1 / 180933 WormBaseID:WBGene00002233 Length:740 Species:Caenorhabditis elegans


Alignment Length:698 Identity:276/698 - (39%)
Similarity:379/698 - (54%) Gaps:136/698 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    27 TAVQSEQGEAGGGGSPRRLGLLGSPLPPGAPLPGPGSGSGSACGQRSSAAHKRYRRLQNWVYNVL 91
            |...||:|.       |::.|:|.||.                 .::....:|:||:||.::|.|
 Worm   101 TLHDSEEGN-------RKMSLVGKPLT-----------------YKNYRTDQRFRRMQNKMHNFL 141

Human    92 ERPRGW-AFVYHVFIFLLVFSCLVLSVLSTIQEHQELANECLLILEFVMIVVFGLEYIVRVWSAG 155
            |||||| |..||:.:..:|..||.|||.||:.:.:..|...|..||.|.::....|||.||||||
 Worm   142 ERPRGWKAATYHLAVLFMVLMCLALSVFSTMPDFEVNATIVLYYLEIVFVIWLATEYICRVWSAG 206

Human   156 CCCRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRMDRR 220
            |..||||..||.|||...:||||.||.:||:.|:..|..|.:||.||:|.:||.|||||:|:|||
 Worm   207 CRSRYRGISGRIRFATSAYCVIDIIVILASITVLCIGATGQVFAASAIRGLRFFQILRMLRIDRR 271

Human   221 GGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDANSDFSSYADSLWWGTITLTTIG 285
            .||||||||||:||.:||:|..|||||.|||:||||||.||:.|..:.::||:||||.|||:|:|
 Worm   272 AGTWKLLGSVVWAHRQELLTTVYIGFLGLIFSSFLVYLCEKNTNDKYQTFADALWWGVITLSTVG 336

Human   286 YGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAAW 350
            ||||||.||.|:::||..||||||||||||||||||||||||:..||||..:||:|||.|||..|
 Worm   337 YGDKTPETWPGKIIAAFCALLGISFFALPAGILGSGFALKVQQHQRQKHLIRRRVPAAKLIQCLW 401

Human   351 RLYSTDMSRAYLTATWYYYDSILPSFRELALLFEHVQRARNGGLRPLEVRRAPVPDGAPSRYPPV 415
            |.||.......| |||..:.:     |||                                 ||:
 Worm   402 RHYSAAPESTSL-ATWKIHLA-----REL---------------------------------PPI 427

Human   416 ATCHRPGSTSFCPGESSRMGIKDRIRMGSSQRRTGPSKQHLAPPTMPTSP--------------S 466
            ......||       ::..|:.:|:|. |::|....:.|:||..:..||.              |
 Worm   428 VKLTPNGS-------NNATGLINRLRQ-STKRTPNLNNQNLAVNSQATSKNLSVPRVHDTISLVS 484

Human   467 SEQVGEATSPTKVQKSWSFNDRTRFRASLRLKPRTSAED--------APSEEVAEEK---SYQCE 520
            :..:.|......:..|..:..::::..|     :.:.:|        |||....:|:   .||.:
 Worm   485 TSDISEIEQLGALGFSLGWKSKSKYGGS-----KKATDDSVLQSRMLAPSNAHLDEEEAVGYQPQ 544

Human   521 LTVDDIMPAVKTVIRSIRILKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQTRVDQ 585
             |:::..||:|..:|:||.::.|||::||||.|:|||||||||||||||:|:..|:|::|.::|.
 Worm   545 -TIEEFTPALKNCVRAIRRIQLLVARKKFKEALKPYDVKDVIEQYSAGHVDLQSRVKTVQAKLDF 608

Human   586 IVGRGPGDRKAREKGDKGPSDAEVVDEISMMGRVVKVEKQVQSIEHKLDLLLGFYSRCLRSGTSA 650
            |.|      |..||         :..:|||..|:..:|..|..::.||||::.     :..|..|
 Worm   609 ICG------KNIEK---------IEPKISMFTRIATLETTVGKMDKKLDLMVE-----MLMGRQA 653

Human   651 SLGAVQVPLFDPDITSDYHSPVDHEDISVSA-QTLSISR--SVSTNMD 695
            |          ..:.|...||........|| |.|:.||  .|||:|:
 Worm   654 S----------QRVFSQNTSPRGEFSEPTSARQDLTRSRRSMVSTDME 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQ4NP_004691.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
MIG-14_Wnt-bd <92..190 CDD:284153 50/98 (51%)
Ion_trans 126..330 CDD:278921 129/203 (64%)
Ion_trans_2 246..320 CDD:285168 51/73 (70%)
Selectivity filter. /evidence=ECO:0000250 283..288 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..480 16/93 (17%)
KCNQ_channel 474..653 CDD:281513 62/189 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..515 4/26 (15%)
A-domain (Tetramerization) 546..650 41/103 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 587..606 4/18 (22%)
kqt-1NP_741819.1 Ion_trans 173..379 CDD:278921 128/205 (62%)
Ion_trans_2 297..371 CDD:285168 51/73 (70%)
KCNQ_channel <540..651 CDD:281513 52/131 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 285 1.000 Domainoid score I964
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 458 1.000 Inparanoid score I963
Isobase 1 0.950 - 0 Normalized mean entropy S4661
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168835at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm16077
orthoMCL 1 0.900 - - OOG6_102886
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4953
SonicParanoid 1 1.000 - - X604
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.950

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