DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC3 and SMC3

DIOPT Version :10

Sequence 1:NP_005436.1 Gene:SMC3 / 9126 HGNCID:2468 Length:1217 Species:Homo sapiens
Sequence 2:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster


Alignment Length:311 Identity:59/311 - (18%)
Similarity:111/311 - (35%) Gaps:93/311 - (29%)


- Green bases have known domain annotations that are detailed below.


Human    51 CLLCSTLAWQQHLRDAVSSLKIAERVQGELFASRTLSSWGS-AAAASGDSIECYTDIPKIIYA-- 112
            ||:|.:.|..::. .|:|....      ::|.:|...::.. .........|.:|.:||..:.  
  Fly     3 CLVCCSYASSRNF-GALSCSAC------KMFFTRATKNYAKFTCKYDKKCFESFTILPKCQFCRF 60

Human   113 ------SRTHSQLTQVIRELRNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRS 171
                  ....|:..|.:..|.|:..:..:.:||:   |.:...|  ..||.:             
  Fly    61 KKCLEIGMRFSEPKQQLFNLNNSVDQDLIILLGN---LAVKDGV--HYSNFL------------- 107

Human   172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMC-----------------PYYLSRNMKQQA 219
             :||:          |..|.:|  |::.:.|:.|:.                 .||   .:.|..
  Fly   108 -NFYS----------LEDPSMD--DILADRSRMKLMKRTLEIKTKSHEWTFLGSYY---KIAQFL 156

Human   220 DIIFMPYNYLLDAKSRKAHSIDLKGTVVIFDEAHNVEKICEESAS------------FDLTPRDV 272
            |..|:....|.|.|...:::....|::......:..::.|..:.|            ||.||   
  Fly   157 DFDFVKTMSLADRKILFSYNTLRMGSLSRSMRTYLDKRDCLMTPSGDDLFSPAVRGLFDKTP--- 218

Human   273 ASGLEIINQVLEE------QARVTQQGELQQEFIVDTSSSGLNMELEDIAK 317
                ||||::|.:      :.::|.:..|....||..:.| ::.||.|.|:
  Fly   219 ----EIINRILCQVVGRLMEIKITYEEYLLLIMIVFCNPS-ISHELSDSAR 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_005436.1 SMC_N 2..1197 CDD:426784 59/311 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..268 5/37 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1059..1090
SMC3NP_523374.2 SMC_N 2..1180 CDD:426784 59/311 (19%)
Blue background indicates that the domain is not in the aligned region.

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