DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCARF2 and epi-1

DIOPT Version :9

Sequence 1:NP_699165.3 Gene:SCARF2 / 91179 HGNCID:19869 Length:871 Species:Homo sapiens
Sequence 2:NP_001294008.1 Gene:epi-1 / 177956 WormBaseID:WBGene00001328 Length:3715 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARF2NP_699165.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
PHA03247 <534..871 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 570..871
epi-1NP_001294008.1 LamNT 24..296 CDD:214532
EGF_Lam 297..345 CDD:238012
Laminin_EGF 427..474 CDD:278482
EGF_Lam 471..520 CDD:238012
EGF_Lam 519..564 CDD:214543
Laminin_EGF 564..612 CDD:278482
Laminin_EGF 610..658 CDD:278482
Laminin_EGF 656..703 CDD:278482
Laminin_EGF 701..753 CDD:278482
Laminin_EGF 756..806 CDD:278482
EGF_Lam 808..854 CDD:238012
CBM6-CBM35-CBM36_like 855..988 CDD:271143
EGF_Lam 1425..1468 CDD:238012
EGF_Lam 1472..1515 CDD:238012
Laminin_EGF 1517..1567 CDD:278482
Laminin_EGF 1565..1613 CDD:278482
LamB 1669..1793 CDD:214597
EGF_Lam 1840..1883 CDD:238012
Laminin_EGF 1891..1945 CDD:278482
EGF_Lam 1947..1998 CDD:238012
EGF_Lam 2001..2045 CDD:214543
EGF_Lam 2048..2092 CDD:214543
EGF_Lam 2095..2140 CDD:214543
Tar <2145..2378 CDD:223910
BAR 2289..2486 CDD:299863
Apolipoprotein 2289..2472 CDD:279749
COG1340 2414..2690 CDD:224259
ApoLp-III_like 2510..2635 CDD:304399
Laminin_II 2589..2730 CDD:283628
LamG 2704..2875 CDD:238058
LamG 2909..3057 CDD:238058
LamG 3353..3510 CDD:238058
LamG 3532..3682 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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